Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0177 ATGGCTCGCCTCATGTCCGGCGTCGACAAGGCCAAAATCCCCGCCGTCAAACTCTCTTCTTCCATTCCCTCTTCTTTCAGAGGAAGAACGCGCCTGAGGATGCTCTCCGCCGCCGCCGCCGCTTCTTCTTTTCCGGCGAAGGCGAGCCTGGCCCATCGCCGAGACTCGCCGCGCAATGTTTCGTTAGATGCTTTGATCAAAGGGGATCGCAAAGAGGAGGTGGTTGGCGCCATTGATAAATCCTTGTCCAACTGTCTGTCGGAGACGAATCTTCACTTGACCGTTCCAGGGATTACGTCCAAAACCAGGGGCAAGGTGAGAGATATTTACGACTATGGGGATTATCTTGTTTTGGTTACAACTGATCGACAAAGTGCGTTCGATAGAGTTCTTGCTTCCATACCTTTTAAGGGCCAGGTTCTTAATGAGACCAGTTTGTGGTGGTTTGACAGAACGCAGCATATTACTTCTAATGCTGTTGTGTCAGTCCCGGATAAAAATGTCACAATTGCAAAGAAGTGTACAGTGTTTCCTGTTGAATTTGTTGTTCGAGGGTTTGTCACTGGAAGTACTGATACATCGTTATGGACGGTGTACAATAAAGGGATGAGAAACTACTGTGGAAATGTTCTCCCAGATGGCCTGGTTAAAAATGACAAGCTTTCTTCCAATATACTCACTCCAACGACCAAGGCTGCTTCACACGACGTTCCCGTGACGCCAGATGAGATCATTGAACGGGGGTTGATGACTCAAGCTGATTACAATGAAGTAAGTAGAAAGGCACTAAGCTTGTTCGAGTATGGGCAGAAAGTGGCTTTGGAGCATGGTATGATACTGGTTGACACAAAGTATGAGTTTGGCAAGGGAGAGGATGGATCTATTCTTTTAATTGATGAGGTGCATACACCGGATTCGAGTAGATACTGGATTGCACAGTCCTACGAAGAACGCTTTCAAAATGGCCTTGAACCTGAAAATGTTGACAAGGAATTCTTGAGGTTGTGGTTCAAAGATAATTGCAACCCATATGAAGATGAGGTTCTCCCAGATGCTCCTGAAGAACTTGTCCGTGAACTGTCATGGCGATATATCTTCTTGTACGAGACAATAACCCAATCCAAATTTGAAGTGCCAATGGCCGAGGAACCAGTACATGATCGGATTTCACGAAACGTCAAAACGGCACTTGAATCGTTAAAGTAA 1206 46.19 MARLMSGVDKAKIPAVKLSSSIPSSFRGRTRLRMLSAAAAASSFPAKASLAHRRDSPRNVSLDALIKGDRKEEVVGAIDKSLSNCLSETNLHLTVPGITSKTRGKVRDIYDYGDYLVLVTTDRQSAFDRVLASIPFKGQVLNETSLWWFDRTQHITSNAVVSVPDKNVTIAKKCTVFPVEFVVRGFVTGSTDTSLWTVYNKGMRNYCGNVLPDGLVKNDKLSSNILTPTTKAASHDVPVTPDEIIERGLMTQADYNEVSRKALSLFEYGQKVALEHGMILVDTKYEFGKGEDGSILLIDEVHTPDSSRYWIAQSYEERFQNGLEPENVDKEFLRLWFKDNCNPYEDEVLPDAPEELVRELSWRYIFLYETITQSKFEVPMAEEPVHDRISRNVKTALESLK 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1219354 1224331 - Sed0016629.1 Sed04g0177 708780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0177 401 CDD SAICAR_synt_Sc 103 372 - -
Sed04g0177 401 Gene3D Phosphorylase Kinase; domain 1 85 179 - -
Sed04g0177 401 Hamap Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 98 362 IPR028923 -
Sed04g0177 401 Gene3D - 180 322 - -
Sed04g0177 401 FunFam Phosphoribosylaminoimidazole-succinocarboxamide synthase 88 180 - -
Sed04g0177 401 ProSitePatterns SAICAR synthetase signature 2. 280 288 IPR018236 GO:0004639(InterPro)|GO:0006164(InterPro)
Sed04g0177 401 ProSitePatterns SAICAR synthetase signature 1. 176 190 IPR018236 GO:0004639(InterPro)|GO:0006164(InterPro)
Sed04g0177 401 Pfam SAICAR synthetase 102 347 IPR028923 -
Sed04g0177 401 PANTHER PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE 46 397 - GO:0004639(PANTHER)|GO:0005737(PANTHER)|GO:0006189(PANTHER)|GO:0009570(PANTHER)
Sed04g0177 401 FunFam Phosphoribosylaminoimidazole-succinocarboxamide synthase 176 326 - -
Sed04g0177 401 SUPERFAMILY SAICAR synthase-like 93 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0177 K01923 - - csv:101217870 697.967
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g472 . . . . . . . . Cmo05g00551 . . . . . Sed04g0177 . . Bhi04g00801 Tan02g2438 Cmetu03g0642 . Hepe10g0459 . Lcy13g1509 Cla08g01141 Cam08g1600 Cec08g1171 Cco08g1298 Clacu08g1300 . Cre08g1083 . . Cone17ag1194 . . . . Cme03g01831 Blo17g00106 . . . . Bpe14g00472 . Bma02g00124 . . . . Cma05g00522 Car05g00473 . . . . . . . . . . . . . . . . . Lsi08g00999 Csa02g02183 Chy03g01334 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011405 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 3 1 31