Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0182 ATGGATTTCGACGACGACCACGAAGACCAAGACGATGAAATAATGGAAGAAATGCCCATCGCCCACCACTACGACCCGAACCCGACCCGAACCAAACCCGGCGAAGGCTCATCGGCGGCGAGGAAGAACGGCGGCGGAGGGAACATACGATACAGAGAGTGTTTAAAGAATCACGCAATCGGAATCGGCGGGCAGGCGGTGGACGGCTGCGGCGAGTTTATGCCGGCCGGCGAGGAAGGAAGTATAGACGCACTAAAATGCGCCGCCTGTAACTGTCACCGGAATTTCCACCGCAAAGAAACCGATTCCGATCACGGGCATAATTATTATCATCATCATCAACAACAACTTTCCTCTTACCGTGGGCCCCCGCCACATCACCCGTCAGGGTACGTGTACTTGACGGGGTCCCCGGTGGCGCAGCAGAGGCCGCTGGCGCTGCCTGCTGCGCCCGGGAGGGAGGAGGACGACACGTCGAACCCGAGCAGCAGCGGGGGAGGCGGGGGCGGAAGCGGGTTCATGAAGAAGAGGTTTAGGACAAAGTTCAGCCAGGAGCAAAAGGAGAAAATGTTAGGGTTTGCTGAGAAAGTTGGATGGACAATTCAGAAACATGATGAGGCTGACGTGGAACGGTTCTGTTTGGAAACCGGCGTTCAGCGGCAAGTTTTAAAGGTATGGATGCACAACAACAAGCATACTTTGGGGAAGAAACCTTAG 717 55.51 MDFDDDHEDQDDEIMEEMPIAHHYDPNPTRTKPGEGSSAARKNGGGGNIRYRECLKNHAIGIGGQAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDHGHNYYHHHQQQLSSYRGPPPHHPSGYVYLTGSPVAQQRPLALPAAPGREEDDTSNPSSSGGGGGGSGFMKKRFRTKFSQEQKEKMLGFAEKVGWTIQKHDEADVERFCLETGVQRQVLKVWMHNNKHTLGKKP 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1258331 1259473 - Sed0008587.1 Sed04g0182 708785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0182 238 SUPERFAMILY Homeodomain-like 162 236 IPR009057 -
Sed04g0182 238 Gene3D - 159 236 - -
Sed04g0182 238 MobiDBLite consensus disorder prediction 1 48 - -
Sed04g0182 238 ProSitePatterns Zinc finger C2H2 type domain signature. 87 111 IPR013087 -
Sed04g0182 238 Pfam ZF-HD protein dimerisation region 49 101 IPR006456 -
Sed04g0182 238 FunFam Zinc-finger homeodomain protein 2 168 236 - -
Sed04g0182 238 MobiDBLite consensus disorder prediction 149 175 - -
Sed04g0182 238 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 50 100 IPR006456 -
Sed04g0182 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 233 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Sed04g0182 238 MobiDBLite consensus disorder prediction 1 15 - -
Sed04g0182 238 NCBIfam homeobox domain, ZF-HD class 175 231 IPR006455 -
Sed04g0182 238 MobiDBLite consensus disorder prediction 103 134 - -
Sed04g0182 238 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 51 100 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2350 Sed-Chr1:17719556 Sed04g0182 Sed-Chr4:1258331 2.30E-17 dispersed
Sed04g0182 Sed-Chr4:1258331 Sed10g1356 Sed-Chr10:29204161 1.10E-44 dispersed
Sed10g0827 Sed-Chr10:6051719 Sed04g0182 Sed-Chr4:1258331 2.00E-43 wgd
Sed14g0994 Sed-Chr14:19333041 Sed04g0182 Sed-Chr4:1258331 7.70E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38008 PF04770 ZF-HD_dimer 6.80E-30 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0182 - - - 0.0