Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0182 ATGGATTTCGACGACGACCACGAAGACCAAGACGATGAAATAATGGAAGAAATGCCCATCGCCCACCACTACGACCCGAACCCGACCCGAACCAAACCCGGCGAAGGCTCATCGGCGGCGAGGAAGAACGGCGGCGGAGGGAACATACGATACAGAGAGTGTTTAAAGAATCACGCAATCGGAATCGGCGGGCAGGCGGTGGACGGCTGCGGCGAGTTTATGCCGGCCGGCGAGGAAGGAAGTATAGACGCACTAAAATGCGCCGCCTGTAACTGTCACCGGAATTTCCACCGCAAAGAAACCGATTCCGATCACGGGCATAATTATTATCATCATCATCAACAACAACTTTCCTCTTACCGTGGGCCCCCGCCACATCACCCGTCAGGGTACGTGTACTTGACGGGGTCCCCGGTGGCGCAGCAGAGGCCGCTGGCGCTGCCTGCTGCGCCCGGGAGGGAGGAGGACGACACGTCGAACCCGAGCAGCAGCGGGGGAGGCGGGGGCGGAAGCGGGTTCATGAAGAAGAGGTTTAGGACAAAGTTCAGCCAGGAGCAAAAGGAGAAAATGTTAGGGTTTGCTGAGAAAGTTGGATGGACAATTCAGAAACATGATGAGGCTGACGTGGAACGGTTCTGTTTGGAAACCGGCGTTCAGCGGCAAGTTTTAAAGGTATGGATGCACAACAACAAGCATACTTTGGGGAAGAAACCTTAG 717 55.51 MDFDDDHEDQDDEIMEEMPIAHHYDPNPTRTKPGEGSSAARKNGGGGNIRYRECLKNHAIGIGGQAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDHGHNYYHHHQQQLSSYRGPPPHHPSGYVYLTGSPVAQQRPLALPAAPGREEDDTSNPSSSGGGGGGSGFMKKRFRTKFSQEQKEKMLGFAEKVGWTIQKHDEADVERFCLETGVQRQVLKVWMHNNKHTLGKKP 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1258331 1259473 - Sed0008587.1 Sed04g0182 708785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0182 238 SUPERFAMILY Homeodomain-like 162 236 IPR009057 -
Sed04g0182 238 Gene3D - 159 236 - -
Sed04g0182 238 MobiDBLite consensus disorder prediction 1 48 - -
Sed04g0182 238 ProSitePatterns Zinc finger C2H2 type domain signature. 87 111 IPR013087 -
Sed04g0182 238 Pfam ZF-HD protein dimerisation region 49 101 IPR006456 -
Sed04g0182 238 FunFam Zinc-finger homeodomain protein 2 168 236 - -
Sed04g0182 238 MobiDBLite consensus disorder prediction 149 175 - -
Sed04g0182 238 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 50 100 IPR006456 -
Sed04g0182 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 233 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Sed04g0182 238 MobiDBLite consensus disorder prediction 1 15 - -
Sed04g0182 238 NCBIfam homeobox domain, ZF-HD class 175 231 IPR006455 -
Sed04g0182 238 MobiDBLite consensus disorder prediction 103 134 - -
Sed04g0182 238 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 51 100 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0182 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2350 Sed-Chr1:17719556 Sed04g0182 Sed-Chr4:1258331 2.30E-17 dispersed
Sed04g0182 Sed-Chr4:1258331 Sed10g1356 Sed-Chr10:29204161 1.10E-44 dispersed
Sed10g0827 Sed-Chr10:6051719 Sed04g0182 Sed-Chr4:1258331 2.00E-43 wgd
Sed14g0994 Sed-Chr14:19333041 Sed04g0182 Sed-Chr4:1258331 7.70E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g479 . Blo12g00721 . . Bpe02g00132 . . Bma01g02594 Cmo05g00555 . . . . . Sed04g0182 . . Bhi04g00810 Tan02g2444 Cmetu03g1591 . Hepe10g0451 . Lcy13g1504 . . . . . . . . . Cone17ag1192 . . . . Cme03g01827 . . Bda11g00787 . . . . . . . . . Cma05g00527 Car05g00476 . Cpe11g00465 . . . . . . . . . . . . . . . Lsi08g01003 Csa02g02187 Chy03g01330 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g0182 . 47 238 ZF-HD Transcription Factor Family AT5G65410 55.7 8.1e-44 175.3
Sed04g0182 . 1 234 ZF-HD Transcription Factor Family AT4G24660 50.4 1.8e-52 203.8
Sed07g1780 . 60 207 ZF-HD Transcription Factor Family AT4G24660 52.7 1.4e-41 167.5
Sed04g0182 . 49 237 ZF-HD Transcription Factor Family AT2G02540 52.7 7.9e-40 162.2
Sed02g0002 . 75 279 ZF-HD Transcription Factor Family AT1G14440 52.0 2.2e-50 197.2
Sed03g0209 . 12 257 ZF-HD Transcription Factor Family AT5G15210 57.3 1.3e-51 201.1
Sed08g1335 . 13 263 ZF-HD Transcription Factor Family AT5G15210 56.2 2.3e-51 200.3
Sed06g0625 . 23 286 ZF-HD Transcription Factor Family AT5G15210 50.4 2.1e-44 177.2
Sed08g1335 . 23 251 ZF-HD Transcription Factor Family AT3G28920 64.0 1.7e-58 224.2
Sed03g0209 . 10 259 ZF-HD Transcription Factor Family AT3G28920 57.6 3.8e-58 223.0
Sed06g0625 . 22 250 ZF-HD Transcription Factor Family AT3G28920 60.2 1.5e-51 201.1
Sed03g0209 . 12 270 ZF-HD Transcription Factor Family AT5G39760 53.1 1.3e-51 201.4
Sed08g1335 . 31 256 ZF-HD Transcription Factor Family AT5G39760 56.4 7.2e-47 185.7
Sed06g0625 . 30 273 ZF-HD Transcription Factor Family AT5G39760 58.4 1.4e-45 181.4
Sed08g1335 . 62 252 ZF-HD Transcription Factor Family AT1G69600 50.5 7.5e-46 181.8
Sed04g0182 . 49 237 ZF-HD Transcription Factor Family AT2G02540 52.7 7.9e-40 162.2
Sed04g0182 . 1 234 ZF-HD Transcription Factor Family AT4G24660 50.4 1.8e-52 203.8
Sed07g1780 . 60 207 ZF-HD Transcription Factor Family AT4G24660 52.7 1.4e-41 167.5
Sed03g0209 . 12 270 ZF-HD Transcription Factor Family AT5G39760 53.1 1.3e-51 201.4
Sed08g1335 . 31 256 ZF-HD Transcription Factor Family AT5G39760 56.4 7.2e-47 185.7
Sed06g0625 . 30 273 ZF-HD Transcription Factor Family AT5G39760 58.4 1.4e-45 181.4
Sed04g0182 . 47 238 ZF-HD Transcription Factor Family AT5G65410 55.7 8.1e-44 175.3
Sed08g1335 . 62 252 ZF-HD Transcription Factor Family AT1G69600 50.5 7.5e-46 181.8
Sed03g0209 . 12 257 ZF-HD Transcription Factor Family AT5G15210 57.3 1.3e-51 201.1
Sed08g1335 . 13 263 ZF-HD Transcription Factor Family AT5G15210 56.2 2.3e-51 200.3
Sed06g0625 . 23 286 ZF-HD Transcription Factor Family AT5G15210 50.4 2.1e-44 177.2
Sed02g0002 . 75 279 ZF-HD Transcription Factor Family AT1G14440 52.0 2.2e-50 197.2
Sed08g1335 . 23 251 ZF-HD Transcription Factor Family AT3G28920 64.0 1.7e-58 224.2
Sed03g0209 . 10 259 ZF-HD Transcription Factor Family AT3G28920 57.6 3.8e-58 223.0
Sed06g0625 . 22 250 ZF-HD Transcription Factor Family AT3G28920 60.2 1.5e-51 201.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38008 PF04770 ZF-HD_dimer 6.80E-30 No_clan Sed TF