Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0187 ATGGCGCCCAGTTTTGACCTTTTGTGCGCTGAAGAGAATTGCACTTTCGATGATGAAACAGAGACTGGGGAGTTTTTACCGGTTCCTTGTTTTCTTACAAGTAGTGAGATACAGAGCCGGCGCCGCCGATGCGGCGGCGGCGACGGCGGCGATGGGTTGCCGTTTTTGAGCGATGAATGTTTGGTTGAAATGGTCGAGAAGGAAACCCATCATTTGCCTGTTGATGGGTATCTTGCGAAGTTGCAGAACGGCGAGTTGGATGTTGGGGATAGAAAAGAAGCCGTTGATTGGATTGAAAAGGTGAGTGCTCATTTCAGTTTTGGACCTCTCTGTACATACTTAGCTGTAAACTACTTGGATCGGTTTCTCTCCGCTTACGATCTACCCAAAGGGAAAGCTTGGGCAATGCAGTTGCTGGCTGTGGCATGTATGTCCCTTGCAGCCAAATTGGAGGAGACTGAAGTCCCACTCACTTTGGATTTACAGGTGGGTGGATCAAAGTTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTCTTGACCACATTGGGGTGGAGAATGCAATCAGTTACGCCTTTCTCGTATATCGATCATTACCTCCACAAGATCCATGACGACGAACTCTCTCTCAAAATGTCGGTCACCCAATCGATTCGTATACTCTTGAACATAATACAAGGGATTGACTTCTTGGAATTCAAGCCTTCTGAAATTGCAGCAGCTGTGGCAATATCAGTAGCTCAATCTGTGGACCCTGAGAGAGCAATTCCTCTTCTCATTCAGCAACTTCAAATGGAAAGAGTCTTGAAGTGCATTAAGTTAATTAATGACATGTCGTTAATCGACGGGGGAGGGTCGGGGAAGGAGTCGAGAGTGTCAATGTCGGAGCCCCGAAGCCCGAGTGGGGTGTTAGACGTGACTTGTTTAAGCTATAAAAGCAATGATACAGCAGCAGTTGGGTCATGTGCAAATTCTTCACATCATAACAGCTCAGAAGCTACAAAGAGGAGGAGATTGAATAGACCTTGTGAAGTGGAGCTATAG 1053 46.34 MAPSFDLLCAEENCTFDDETETGEFLPVPCFLTSSEIQSRRRRCGGGDGGDGLPFLSDECLVEMVEKETHHLPVDGYLAKLQNGELDVGDRKEAVDWIEKVSAHFSFGPLCTYLAVNYLDRFLSAYDLPKGKAWAMQLLAVACMSLAAKLEETEVPLTLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQSVTPFSYIDHYLHKIHDDELSLKMSVTQSIRILLNIIQGIDFLEFKPSEIAAAVAISVAQSVDPERAIPLLIQQLQMERVLKCIKLINDMSLIDGGGSGKESRVSMSEPRSPSGVLDVTCLSYKSNDTAAVGSCANSSHHNSSEATKRRRLNRPCEVEL 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1317654 1320628 - Sed0006143.1 Sed04g0187 708790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0187 350 Gene3D - 74 191 - -
Sed04g0187 350 Pfam Cyclin, C-terminal domain 193 282 IPR004367 -
Sed04g0187 350 MobiDBLite consensus disorder prediction 333 350 - -
Sed04g0187 350 CDD CYCLIN_AtCycD-like_rpt2 193 278 - -
Sed04g0187 350 Gene3D - 63 260 - -
Sed04g0187 350 CDD CYCLIN_AtCycD-like_rpt1 90 188 - -
Sed04g0187 350 SMART Cyclin_C_2 193 315 IPR004367 -
Sed04g0187 350 MobiDBLite consensus disorder prediction 322 350 - -
Sed04g0187 350 SMART cyclin_7 96 184 IPR013763 -
Sed04g0187 350 FunFam D2/4-type cyclin 74 189 - -
Sed04g0187 350 PANTHER CYCLINS 66 280 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed04g0187 350 Pfam Cyclin, N-terminal domain 63 190 IPR006671 -
Sed04g0187 350 SUPERFAMILY Cyclin-like 176 283 IPR036915 -
Sed04g0187 350 FunFam D6-type cyclin 190 276 - -
Sed04g0187 350 SUPERFAMILY Cyclin-like 55 190 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1384 Sed-Chr3:8792868 Sed04g0187 Sed-Chr4:1317654 3.20E-99 dispersed
Sed04g0187 Sed-Chr4:1317654 Sed11g0784 Sed-Chr11:14952378 1.20E-44 dispersed
Sed10g0826 Sed-Chr10:6040568 Sed04g0187 Sed-Chr4:1317654 2.70E-76 wgd
Sed14g0996 Sed-Chr14:19366486 Sed04g0187 Sed-Chr4:1317654 2.50E-79 wgd
Sed03g1383 Sed-Chr3:8792868 Sed04g0187 Sed-Chr4:1317654 6.60E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0187 K18810 - csv:101216206 563.918