Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0189 ATGCCACCACTTGGTGTCCAACTCTTCATTACAGAACGTCAGGTGACGATGGGTAATGGCATAGTCCAAGTTACATTATCAAACCCAGATGGCTTAGTGATTGGAATTCGATACAATGGAATCGACAACTTGCTCGAAGTTCTCAACGATGAATCTAACCGAGGGTATTGGGATCTCGTGTGGAGCCCATCAGCCTCCACAACTGGATCATTTGATGTGATAAAGGCTACAGACTTCGAGGTTATAGTGGAAAATGAAGACCAAGTGGAGCTTTCCTTTACAAGGAAATGGGATCTTTCTCTCGAAGGAAAGGTTGTGCCTTTAGAGATTGATAAAAGGTTTATAATGCTTCGGGGTTCGTCTGGATTCTACTCTTATGCTATTTACCAACACTTGAAAGAATGGCCTGGTTTCAACCTTGGTGAAAGCAGACTCGCCTTTAAACTCAGAAAAGACAAGTTCCATTATATGGCCATGGCAGACAACAGACAAAGATCCATGCCACTTCCAGATGACCGCTCTCTGCCGAGAGGCCGAGCCCTGGCCTATCCTGAGGCTGTTCTGCTCGTGGACCCCGTGGAACCTGAGCTCCGGGGAGAGGTGGATGACAAATATCAATATTCATGCGACAACAAAGACAGCGGCGTCCATGGCTGGATATCTTCCGACCCGCCGGTCGGGTTCTGGCTAATCACCCCCAGCAACGAGTTCCGGTCTGGTGGACCCGTCAAACAGAACCTGACTTCACACGTCGGCCCAACCACCCTAGCTGTTTTTATCAGTGCCCATTACGCGGGAGAGGATCTGGTGCCGAAAATCGGAGCTGGCGAGGTGTGGAAGAAAGTTTTTGGTCCTGTGTTTATCTATCTCAACTCCTCTTACGATTCCAGCGACGCACTTCAGCTCTGGGAAGATGCCAAGGCACAGGCAACGATCGAAGTCCAAAGTTGGCCCTACAGCTTCCCTGCTTCAGAGGATTTTCTAAAGCCAAACCAACGGGGTAATATCAGTGGCAGACTATTAGTCAAAGACAGTTACGTTAGTGAAGACTATATTCCAGCGAACGGTGCGTTTGTTGGCTTAGCTTCACCAGGAGACGTTGGATCGTGGCAACGAGAGAGCAAGGGTTATCAATTTTGGAGCAGAGCAGATGAAAGTGGGTATTTTTTCATCGACGGCGTATTACCCGGGGACTACAATTTATATTCATGGGTTCCTGGTTTTATTGGAGATTATCGTTACGATGATCTCATCAACATTACAGATCAAGATAGTCAGATAGACGTGGGTGACATAATATACGAGCCTCCAAGAGCAGGGGATACACTATGGGAAATAGGAGTTCCCGATCGCTCAGCTGCAGAATTCTATGTACCTGATCCAAATCCCAACTACGTCAATAAGCTCTATCTTAACCATCCTGATAAGTTTCGGCAGTACGGTCTGTGGGAAAGGTACAGTGAATTGTATCCCGATGCAGACTTGGTGTATACCGTAGGCGTCAATGATTACACCAAGGATTGGTTCTTTGCTCAGGTTACCAGGAAGACAGAAAATGGAACATTCAAGGGAACAACATGGCAGGTGAAATTCAAGCTGGACAATGTAGACAACAATGCAACTTACAAGCTTCGGGTCGCACTGGCCTCTGCCTCTCTCGCGGAACTGCAGGTGGGAGTAAATGACCCAAAAGCGAAGCCGGTGTTTTCCAGTGGGCTGATCGGAAGGGACAATTCGATCGCCAGGCACGGCATTCATGGCCTGCACTGGCATTACAACATTGATATTCCGGGCAACCGGCTATTTACGGGCGACAACACGATCTTCTTCACACAGCCCAGAAGCACAGGCCCCTTTCAAGCCCTCATGTACGACTACATTCGCCTGGAAGCTCCACCGCCACCATACCTCCCGTCTACCAAATAG 1926 48.34 MPPLGVQLFITERQVTMGNGIVQVTLSNPDGLVIGIRYNGIDNLLEVLNDESNRGYWDLVWSPSASTTGSFDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKVVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLGESRLAFKLRKDKFHYMAMADNRQRSMPLPDDRSLPRGRALAYPEAVLLVDPVEPELRGEVDDKYQYSCDNKDSGVHGWISSDPPVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLVPKIGAGEVWKKVFGPVFIYLNSSYDSSDALQLWEDAKAQATIEVQSWPYSFPASEDFLKPNQRGNISGRLLVKDSYVSEDYIPANGAFVGLASPGDVGSWQRESKGYQFWSRADESGYFFIDGVLPGDYNLYSWVPGFIGDYRYDDLINITDQDSQIDVGDIIYEPPRAGDTLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVNDYTKDWFFAQVTRKTENGTFKGTTWQVKFKLDNVDNNATYKLRVALASASLAELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLHWHYNIDIPGNRLFTGDNTIFFTQPRSTGPFQALMYDYIRLEAPPPPYLPSTK 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1340280 1347915 + Sed0006316.1 Sed04g0189 708792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0189 641 Gene3D - 10 305 IPR014718 GO:0030246(InterPro)
Sed04g0189 641 SUPERFAMILY Starch-binding domain-like 330 412 IPR013784 GO:0030246(InterPro)
Sed04g0189 641 CDD RGL4_M 332 432 IPR029413 -
Sed04g0189 641 Gene3D - 439 630 - -
Sed04g0189 641 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 633 IPR051850 -
Sed04g0189 641 FunFam Rhamnogalacturonate lyase B 329 429 - -
Sed04g0189 641 SUPERFAMILY Galactose mutarotase-like 18 293 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Sed04g0189 641 Pfam Rhamnogalacturonate lyase family 6 201 IPR010325 -
Sed04g0189 641 Pfam Polysaccharide lyase family 4, domain III 442 629 IPR029411 -
Sed04g0189 641 CDD RGL4_C 444 630 - -
Sed04g0189 641 SUPERFAMILY Galactose-binding domain-like 440 630 IPR008979 -
Sed04g0189 641 Gene3D - 329 426 - -
Sed04g0189 641 Pfam Polysaccharide lyase family 4, domain II 355 423 IPR029413 -
Sed04g0189 641 CDD RGL4_N 13 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0189 Sed-Chr4:1340280 Sed13g1527 Sed-Chr13:20423355 4.70E-257 dispersed
Sed13g1525 Sed-Chr13:20410113 Sed04g0189 Sed-Chr4:1340280 5.30E-254 wgd
Sed04g0189 Sed-Chr4:1340280 Sed05g1549 Sed-Chr5:29209913 2.20E-278 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0189 K18195 - csv:101215720 1179.47