Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0189 | ATGCCACCACTTGGTGTCCAACTCTTCATTACAGAACGTCAGGTGACGATGGGTAATGGCATAGTCCAAGTTACATTATCAAACCCAGATGGCTTAGTGATTGGAATTCGATACAATGGAATCGACAACTTGCTCGAAGTTCTCAACGATGAATCTAACCGAGGGTATTGGGATCTCGTGTGGAGCCCATCAGCCTCCACAACTGGATCATTTGATGTGATAAAGGCTACAGACTTCGAGGTTATAGTGGAAAATGAAGACCAAGTGGAGCTTTCCTTTACAAGGAAATGGGATCTTTCTCTCGAAGGAAAGGTTGTGCCTTTAGAGATTGATAAAAGGTTTATAATGCTTCGGGGTTCGTCTGGATTCTACTCTTATGCTATTTACCAACACTTGAAAGAATGGCCTGGTTTCAACCTTGGTGAAAGCAGACTCGCCTTTAAACTCAGAAAAGACAAGTTCCATTATATGGCCATGGCAGACAACAGACAAAGATCCATGCCACTTCCAGATGACCGCTCTCTGCCGAGAGGCCGAGCCCTGGCCTATCCTGAGGCTGTTCTGCTCGTGGACCCCGTGGAACCTGAGCTCCGGGGAGAGGTGGATGACAAATATCAATATTCATGCGACAACAAAGACAGCGGCGTCCATGGCTGGATATCTTCCGACCCGCCGGTCGGGTTCTGGCTAATCACCCCCAGCAACGAGTTCCGGTCTGGTGGACCCGTCAAACAGAACCTGACTTCACACGTCGGCCCAACCACCCTAGCTGTTTTTATCAGTGCCCATTACGCGGGAGAGGATCTGGTGCCGAAAATCGGAGCTGGCGAGGTGTGGAAGAAAGTTTTTGGTCCTGTGTTTATCTATCTCAACTCCTCTTACGATTCCAGCGACGCACTTCAGCTCTGGGAAGATGCCAAGGCACAGGCAACGATCGAAGTCCAAAGTTGGCCCTACAGCTTCCCTGCTTCAGAGGATTTTCTAAAGCCAAACCAACGGGGTAATATCAGTGGCAGACTATTAGTCAAAGACAGTTACGTTAGTGAAGACTATATTCCAGCGAACGGTGCGTTTGTTGGCTTAGCTTCACCAGGAGACGTTGGATCGTGGCAACGAGAGAGCAAGGGTTATCAATTTTGGAGCAGAGCAGATGAAAGTGGGTATTTTTTCATCGACGGCGTATTACCCGGGGACTACAATTTATATTCATGGGTTCCTGGTTTTATTGGAGATTATCGTTACGATGATCTCATCAACATTACAGATCAAGATAGTCAGATAGACGTGGGTGACATAATATACGAGCCTCCAAGAGCAGGGGATACACTATGGGAAATAGGAGTTCCCGATCGCTCAGCTGCAGAATTCTATGTACCTGATCCAAATCCCAACTACGTCAATAAGCTCTATCTTAACCATCCTGATAAGTTTCGGCAGTACGGTCTGTGGGAAAGGTACAGTGAATTGTATCCCGATGCAGACTTGGTGTATACCGTAGGCGTCAATGATTACACCAAGGATTGGTTCTTTGCTCAGGTTACCAGGAAGACAGAAAATGGAACATTCAAGGGAACAACATGGCAGGTGAAATTCAAGCTGGACAATGTAGACAACAATGCAACTTACAAGCTTCGGGTCGCACTGGCCTCTGCCTCTCTCGCGGAACTGCAGGTGGGAGTAAATGACCCAAAAGCGAAGCCGGTGTTTTCCAGTGGGCTGATCGGAAGGGACAATTCGATCGCCAGGCACGGCATTCATGGCCTGCACTGGCATTACAACATTGATATTCCGGGCAACCGGCTATTTACGGGCGACAACACGATCTTCTTCACACAGCCCAGAAGCACAGGCCCCTTTCAAGCCCTCATGTACGACTACATTCGCCTGGAAGCTCCACCGCCACCATACCTCCCGTCTACCAAATAG | 1926 | 48.34 | MPPLGVQLFITERQVTMGNGIVQVTLSNPDGLVIGIRYNGIDNLLEVLNDESNRGYWDLVWSPSASTTGSFDVIKATDFEVIVENEDQVELSFTRKWDLSLEGKVVPLEIDKRFIMLRGSSGFYSYAIYQHLKEWPGFNLGESRLAFKLRKDKFHYMAMADNRQRSMPLPDDRSLPRGRALAYPEAVLLVDPVEPELRGEVDDKYQYSCDNKDSGVHGWISSDPPVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLVPKIGAGEVWKKVFGPVFIYLNSSYDSSDALQLWEDAKAQATIEVQSWPYSFPASEDFLKPNQRGNISGRLLVKDSYVSEDYIPANGAFVGLASPGDVGSWQRESKGYQFWSRADESGYFFIDGVLPGDYNLYSWVPGFIGDYRYDDLINITDQDSQIDVGDIIYEPPRAGDTLWEIGVPDRSAAEFYVPDPNPNYVNKLYLNHPDKFRQYGLWERYSELYPDADLVYTVGVNDYTKDWFFAQVTRKTENGTFKGTTWQVKFKLDNVDNNATYKLRVALASASLAELQVGVNDPKAKPVFSSGLIGRDNSIARHGIHGLHWHYNIDIPGNRLFTGDNTIFFTQPRSTGPFQALMYDYIRLEAPPPPYLPSTK | 641 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1340280 | 1347915 | + | Sed0006316.1 | Sed04g0189 | 708792 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0189 | 641 | Gene3D | - | 10 | 305 | IPR014718 | GO:0030246(InterPro) | |
Sed04g0189 | 641 | SUPERFAMILY | Starch-binding domain-like | 330 | 412 | IPR013784 | GO:0030246(InterPro) | |
Sed04g0189 | 641 | CDD | RGL4_M | 332 | 432 | IPR029413 | - | |
Sed04g0189 | 641 | Gene3D | - | 439 | 630 | - | - | |
Sed04g0189 | 641 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 4 | 633 | IPR051850 | - | |
Sed04g0189 | 641 | FunFam | Rhamnogalacturonate lyase B | 329 | 429 | - | - | |
Sed04g0189 | 641 | SUPERFAMILY | Galactose mutarotase-like | 18 | 293 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Sed04g0189 | 641 | Pfam | Rhamnogalacturonate lyase family | 6 | 201 | IPR010325 | - | |
Sed04g0189 | 641 | Pfam | Polysaccharide lyase family 4, domain III | 442 | 629 | IPR029411 | - | |
Sed04g0189 | 641 | CDD | RGL4_C | 444 | 630 | - | - | |
Sed04g0189 | 641 | SUPERFAMILY | Galactose-binding domain-like | 440 | 630 | IPR008979 | - | |
Sed04g0189 | 641 | Gene3D | - | 329 | 426 | - | - | |
Sed04g0189 | 641 | Pfam | Polysaccharide lyase family 4, domain II | 355 | 423 | IPR029413 | - | |
Sed04g0189 | 641 | CDD | RGL4_N | 13 | 299 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0189 | Sed-Chr4:1340280 | Sed13g1527 | Sed-Chr13:20423355 | 4.70E-257 | dispersed | |
Sed13g1525 | Sed-Chr13:20410113 | Sed04g0189 | Sed-Chr4:1340280 | 5.30E-254 | wgd | |
Sed04g0189 | Sed-Chr4:1340280 | Sed05g1549 | Sed-Chr5:29209913 | 2.20E-278 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0189 | K18195 | - | csv:101215720 | 1179.47 |