Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0199 | ATGTACGGACGACCTCAATCGTTGACCATGGCTGACCAGATCGCCTCCGGCGACGACTGCGGCGAGCCGTTGGATAATCACCTTGCTGGATTCGGAGCTCACTCTCTCGACGACGGTGCTGGAGTTGGCGGTTTGATCGAGGATCTCAACCCCGATTCCGTTTATGCTTCCGCCGGCGATGGTTCGGACATTGCTATGCAACGCAGCGATGGCTCGAGCCAGCTCACGCTTTCATTCCGTGGCCAAGTTTATCTGTTCGACACAGTCTCTCCTGAGAAGGTTCAAGCAGTATTATTGTTGTTGGGTGGCTGCGAACTATCTTCTGGTCAGCAAAATGTGGATTTGGTAAATCAGAACCAAAGGAATATTGTTGACTTCCCTGGGCGCAGTAGTCAACCGCAGAGGGCAGCATCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGGTATGGTGTTCGTCAGGAGGTTGCTCTCAGGATGCATCGCAACAAAGGACAGTTTACTTCTTCTAAGAAGTCTGATGGTTCGTATAGCCATGGTAGTGTCTCCGAGTCAGGTCAAGAAGAAAGTCCACCAGAAACTTCATGTACAAATTGTGGCATAAGTTCAATGGCAACGCCAATGATGCGGCGAGGGCCATCTGGGCCTAGATCACTTTGCAATGCATGTGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTTTCAAAGAGAAGTCAGGACCATCCGGTGACTCTGACCGAGCAGTCCGAAATTGATGTTGCTGCCAAGGACTCGGTCTGTAGACATGGTACCCATGCACACAACAATCTCGTTTCTTTCTCGAATGGCGACAACTCTGCTTTAATGGCCGAGCATTAG | 885 | 49.72 | MYGRPQSLTMADQIASGDDCGEPLDNHLAGFGAHSLDDGAGVGGLIEDLNPDSVYASAGDGSDIAMQRSDGSSQLTLSFRGQVYLFDTVSPEKVQAVLLLLGGCELSSGQQNVDLVNQNQRNIVDFPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMHRNKGQFTSSKKSDGSYSHGSVSESGQEESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTLTEQSEIDVAAKDSVCRHGTHAHNNLVSFSNGDNSALMAEH | 294 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1444974 | 1452535 | - | Sed0013011.1 | Sed04g0199 | 708802 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0199 | 294 | SMART | GATA_3 | 197 | 250 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g0199 | 294 | Pfam | tify domain | 70 | 102 | IPR010399 | - | |
Sed04g0199 | 294 | SMART | tify_2 | 68 | 103 | IPR010399 | - | |
Sed04g0199 | 294 | Pfam | GATA zinc finger | 203 | 239 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g0199 | 294 | CDD | ZnF_GATA | 202 | 249 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g0199 | 294 | Gene3D | - | 193 | 253 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Sed04g0199 | 294 | ProSiteProfiles | CCT domain profile. | 135 | 177 | IPR010402 | GO:0005515(InterPro) | |
Sed04g0199 | 294 | ProSiteProfiles | Tify domain profile. | 68 | 103 | IPR010399 | - | |
Sed04g0199 | 294 | ProSiteProfiles | GATA-type zinc finger domain profile. | 197 | 256 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g0199 | 294 | MobiDBLite | consensus disorder prediction | 168 | 205 | - | - | |
Sed04g0199 | 294 | Pfam | CCT motif | 135 | 177 | IPR010402 | GO:0005515(InterPro) | |
Sed04g0199 | 294 | ProSitePatterns | GATA-type zinc finger domain. | 203 | 230 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed04g0199 | 294 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 48 | 288 | IPR045280 | GO:0006355(InterPro) | |
Sed04g0199 | 294 | MobiDBLite | consensus disorder prediction | 176 | 205 | - | - | |
Sed04g0199 | 294 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 196 | 248 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1398 | Sed-Chr3:8902413 | Sed04g0199 | Sed-Chr4:1444974 | 3.00E-139 | dispersed | |
Sed03g1399 | Sed-Chr3:8902413 | Sed04g0199 | Sed-Chr4:1444974 | 1.80E-139 | dispersed | |
Sed04g0199 | Sed-Chr4:1444974 | Sed10g1896 | Sed-Chr10:35776240 | 5.30E-62 | dispersed | |
Sed04g0199 | Sed-Chr4:1444974 | Sed04g0200 | Sed-Chr4:1444974 | 1.00E-158 | tandem | |
Sed03g1393 | Sed-Chr3:8892742 | Sed04g0199 | Sed-Chr4:1444974 | 8.10E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38011 | PF06203 | CCT | 4.80E-15 | CL0281 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0199 | - | - | - | 0.0 |