Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0199 ATGTACGGACGACCTCAATCGTTGACCATGGCTGACCAGATCGCCTCCGGCGACGACTGCGGCGAGCCGTTGGATAATCACCTTGCTGGATTCGGAGCTCACTCTCTCGACGACGGTGCTGGAGTTGGCGGTTTGATCGAGGATCTCAACCCCGATTCCGTTTATGCTTCCGCCGGCGATGGTTCGGACATTGCTATGCAACGCAGCGATGGCTCGAGCCAGCTCACGCTTTCATTCCGTGGCCAAGTTTATCTGTTCGACACAGTCTCTCCTGAGAAGGTTCAAGCAGTATTATTGTTGTTGGGTGGCTGCGAACTATCTTCTGGTCAGCAAAATGTGGATTTGGTAAATCAGAACCAAAGGAATATTGTTGACTTCCCTGGGCGCAGTAGTCAACCGCAGAGGGCAGCATCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGGTATGGTGTTCGTCAGGAGGTTGCTCTCAGGATGCATCGCAACAAAGGACAGTTTACTTCTTCTAAGAAGTCTGATGGTTCGTATAGCCATGGTAGTGTCTCCGAGTCAGGTCAAGAAGAAAGTCCACCAGAAACTTCATGTACAAATTGTGGCATAAGTTCAATGGCAACGCCAATGATGCGGCGAGGGCCATCTGGGCCTAGATCACTTTGCAATGCATGTGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTTTCAAAGAGAAGTCAGGACCATCCGGTGACTCTGACCGAGCAGTCCGAAATTGATGTTGCTGCCAAGGACTCGGTCTGTAGACATGGTACCCATGCACACAACAATCTCGTTTCTTTCTCGAATGGCGACAACTCTGCTTTAATGGCCGAGCATTAG 885 49.72 MYGRPQSLTMADQIASGDDCGEPLDNHLAGFGAHSLDDGAGVGGLIEDLNPDSVYASAGDGSDIAMQRSDGSSQLTLSFRGQVYLFDTVSPEKVQAVLLLLGGCELSSGQQNVDLVNQNQRNIVDFPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMHRNKGQFTSSKKSDGSYSHGSVSESGQEESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTLTEQSEIDVAAKDSVCRHGTHAHNNLVSFSNGDNSALMAEH 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1444974 1452535 - Sed0013011.1 Sed04g0199 708802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0199 294 SMART GATA_3 197 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g0199 294 Pfam tify domain 70 102 IPR010399 -
Sed04g0199 294 SMART tify_2 68 103 IPR010399 -
Sed04g0199 294 Pfam GATA zinc finger 203 239 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g0199 294 CDD ZnF_GATA 202 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g0199 294 Gene3D - 193 253 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed04g0199 294 ProSiteProfiles CCT domain profile. 135 177 IPR010402 GO:0005515(InterPro)
Sed04g0199 294 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Sed04g0199 294 ProSiteProfiles GATA-type zinc finger domain profile. 197 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g0199 294 MobiDBLite consensus disorder prediction 168 205 - -
Sed04g0199 294 Pfam CCT motif 135 177 IPR010402 GO:0005515(InterPro)
Sed04g0199 294 ProSitePatterns GATA-type zinc finger domain. 203 230 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g0199 294 PANTHER GATA TRANSCRIPTION FACTOR 28 48 288 IPR045280 GO:0006355(InterPro)
Sed04g0199 294 MobiDBLite consensus disorder prediction 176 205 - -
Sed04g0199 294 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1398 Sed-Chr3:8902413 Sed04g0199 Sed-Chr4:1444974 3.00E-139 dispersed
Sed03g1399 Sed-Chr3:8902413 Sed04g0199 Sed-Chr4:1444974 1.80E-139 dispersed
Sed04g0199 Sed-Chr4:1444974 Sed10g1896 Sed-Chr10:35776240 5.30E-62 dispersed
Sed04g0199 Sed-Chr4:1444974 Sed04g0200 Sed-Chr4:1444974 1.00E-158 tandem
Sed03g1393 Sed-Chr3:8892742 Sed04g0199 Sed-Chr4:1444974 8.10E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38011 PF06203 CCT 4.80E-15 CL0281 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0199 - - - 0.0