Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0199 ATGTACGGACGACCTCAATCGTTGACCATGGCTGACCAGATCGCCTCCGGCGACGACTGCGGCGAGCCGTTGGATAATCACCTTGCTGGATTCGGAGCTCACTCTCTCGACGACGGTGCTGGAGTTGGCGGTTTGATCGAGGATCTCAACCCCGATTCCGTTTATGCTTCCGCCGGCGATGGTTCGGACATTGCTATGCAACGCAGCGATGGCTCGAGCCAGCTCACGCTTTCATTCCGTGGCCAAGTTTATCTGTTCGACACAGTCTCTCCTGAGAAGGTTCAAGCAGTATTATTGTTGTTGGGTGGCTGCGAACTATCTTCTGGTCAGCAAAATGTGGATTTGGTAAATCAGAACCAAAGGAATATTGTTGACTTCCCTGGGCGCAGTAGTCAACCGCAGAGGGCAGCATCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGGTATGGTGTTCGTCAGGAGGTTGCTCTCAGGATGCATCGCAACAAAGGACAGTTTACTTCTTCTAAGAAGTCTGATGGTTCGTATAGCCATGGTAGTGTCTCCGAGTCAGGTCAAGAAGAAAGTCCACCAGAAACTTCATGTACAAATTGTGGCATAAGTTCAATGGCAACGCCAATGATGCGGCGAGGGCCATCTGGGCCTAGATCACTTTGCAATGCATGTGGACTTTTTTGGGCAAACAGGGGCACTTTAAGGGATCTTTCAAAGAGAAGTCAGGACCATCCGGTGACTCTGACCGAGCAGTCCGAAATTGATGTTGCTGCCAAGGACTCGGTCTGTAGACATGGTACCCATGCACACAACAATCTCGTTTCTTTCTCGAATGGCGACAACTCTGCTTTAATGGCCGAGCATTAG 885 49.72 MYGRPQSLTMADQIASGDDCGEPLDNHLAGFGAHSLDDGAGVGGLIEDLNPDSVYASAGDGSDIAMQRSDGSSQLTLSFRGQVYLFDTVSPEKVQAVLLLLGGCELSSGQQNVDLVNQNQRNIVDFPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMHRNKGQFTSSKKSDGSYSHGSVSESGQEESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHPVTLTEQSEIDVAAKDSVCRHGTHAHNNLVSFSNGDNSALMAEH 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1444974 1452535 - Sed0013011.1 Sed04g0199 708802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0199 294 SMART GATA_3 197 250 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g0199 294 Pfam tify domain 70 102 IPR010399 -
Sed04g0199 294 SMART tify_2 68 103 IPR010399 -
Sed04g0199 294 Pfam GATA zinc finger 203 239 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g0199 294 CDD ZnF_GATA 202 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g0199 294 Gene3D - 193 253 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed04g0199 294 ProSiteProfiles CCT domain profile. 135 177 IPR010402 GO:0005515(InterPro)
Sed04g0199 294 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Sed04g0199 294 ProSiteProfiles GATA-type zinc finger domain profile. 197 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g0199 294 MobiDBLite consensus disorder prediction 168 205 - -
Sed04g0199 294 Pfam CCT motif 135 177 IPR010402 GO:0005515(InterPro)
Sed04g0199 294 ProSitePatterns GATA-type zinc finger domain. 203 230 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed04g0199 294 PANTHER GATA TRANSCRIPTION FACTOR 28 48 288 IPR045280 GO:0006355(InterPro)
Sed04g0199 294 MobiDBLite consensus disorder prediction 176 205 - -
Sed04g0199 294 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 248 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0199 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1398 Sed-Chr3:8902413 Sed04g0199 Sed-Chr4:1444974 3.00E-139 dispersed
Sed03g1399 Sed-Chr3:8902413 Sed04g0199 Sed-Chr4:1444974 1.80E-139 dispersed
Sed04g0199 Sed-Chr4:1444974 Sed10g1896 Sed-Chr10:35776240 5.30E-62 dispersed
Sed04g0199 Sed-Chr4:1444974 Sed04g0200 Sed-Chr4:1444974 1.00E-158 tandem
Sed03g1393 Sed-Chr3:8892742 Sed04g0199 Sed-Chr4:1444974 8.10E-51 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g2344 . 1 221 Tify Gene Family AT3G21175 55.7 2.1e-55 213.4
Sed04g2343 . 1 230 Tify Gene Family AT3G21175 53.5 3.3e-53 206.1
Sed04g0199 . 50 294 Tify Gene Family AT4G24470 53.3 3.4e-70 263.1
Sed03g1397 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed03g1399 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed10g1896 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed10g1897 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed04g2344 . 73 264 Tify Gene Family AT4G24470 54.9 6.8e-47 185.7
Sed10g1898 . 87 257 Tify Gene Family AT4G24470 59.0 3.7e-45 179.9
Sed04g2343 . 73 273 Tify Gene Family AT4G24470 52.5 6.4e-45 179.1
Sed04g2344 . 1 286 Tify Gene Family AT1G51600 57.7 1.6e-82 303.9
Sed04g2343 . 1 295 Tify Gene Family AT1G51600 56.4 1.1e-81 301.2
Sed03g1393 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1394 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1395 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1396 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed10g1896 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed10g1897 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed04g0199 . 37 247 Tify Gene Family AT1G51600 53.5 5.9e-48 189.1
Sed10g1898 . 84 257 Tify Gene Family AT1G51600 60.4 1.7e-47 187.6
Sed06g0794 . 62 234 Tify Gene Family AT1G51600 51.1 3.2e-38 156.8
Sed04g0199 . 50 294 Tify Gene Family AT4G24470 53.3 3.4e-70 263.1
Sed03g1397 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed03g1399 . 44 291 Tify Gene Family AT4G24470 56.2 7.5e-70 261.9
Sed10g1896 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed10g1897 . 87 265 Tify Gene Family AT4G24470 60.2 5.6e-49 192.6
Sed04g2344 . 73 264 Tify Gene Family AT4G24470 54.9 6.8e-47 185.7
Sed10g1898 . 87 257 Tify Gene Family AT4G24470 59.0 3.7e-45 179.9
Sed04g2343 . 73 273 Tify Gene Family AT4G24470 52.5 6.4e-45 179.1
Sed04g2344 . 1 286 Tify Gene Family AT1G51600 57.7 1.6e-82 303.9
Sed04g2343 . 1 295 Tify Gene Family AT1G51600 56.4 1.1e-81 301.2
Sed03g1393 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1394 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1395 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed03g1396 . 73 294 Tify Gene Family AT1G51600 51.7 1.0e-52 204.9
Sed10g1896 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed10g1897 . 84 267 Tify Gene Family AT1G51600 60.9 1.9e-51 200.7
Sed04g0199 . 37 247 Tify Gene Family AT1G51600 53.5 5.9e-48 189.1
Sed10g1898 . 84 257 Tify Gene Family AT1G51600 60.4 1.7e-47 187.6
Sed06g0794 . 62 234 Tify Gene Family AT1G51600 51.1 3.2e-38 156.8
Sed04g2344 . 1 221 Tify Gene Family AT3G21175 55.7 2.1e-55 213.4
Sed04g2343 . 1 230 Tify Gene Family AT3G21175 53.5 3.3e-53 206.1
Sed09g0734 . 1 180 Tify Gene Family AT4G14713 52.6 4.8e-47 185.7
Sed09g0735 . 1 180 Tify Gene Family AT4G14713 52.6 4.8e-47 185.7
Sed04g1936 . 1 180 Tify Gene Family AT4G14713 51.6 7.1e-43 171.8
Sed04g1935 . 1 180 Tify Gene Family AT4G14713 51.6 7.1e-43 171.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38011 PF06203 CCT 4.80E-15 CL0281 Sed TF