Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0205 | ATGCTCAACCCAACAATGGTTCATCCTAGTTCTTCCCAATTTTCACATAAACTGGGGATTCAAAGTGTTCATGGACGCAATAAGTTACATATTAATGGCAAGGGAAAGGCTCGACTACATCTTGTTACTATCGTTCCTTCATCACACGGTCTGAGGCTTGATTCTGGAAGTCTTCAGCTCTTACGCAGTGCAAGTCGCCCAACAACGTATCCTGTGTCTCCAAGAACAAATGTTTTTGTGTGTAGATCTGTTCTGGAATCAAGTGGTGGAGTAGGGTCTGCTGTTCTTAAGTCTGCAGCTGTGGTTTTGACAAGATCTTATGATGCTTTACGTGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATGAGCCAGATGGCAGTTGGAAGAAAAGCAGTACATACTATCTTACGACTTCGTACGTTCAGCCTCTACTGCTGTGGACTGGAGCTACATTGATCTGCAGGGCATTGGATCCAATTGTTTTACCGTCGGTAGCCAGTCAGGCCGTCAAACAACGACTTCTCAATTTTGTCAGATCGTTATCTACTGTTCTGGCATTTGCCTATTGTATATCAAGCTTGATTCAACAAGTACACAAATTCGCCAGTGAATCAAATGACTCGAGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCTCTTTCACTGTTCATGGAGTTGCTAGGGTTTTCTACCCAGAAGTGGCTCACAGCTGGGGGTCTTGGAACTGTATTGCTTACCCTTGCTGGTCGTGAGATATTTACTAACTTTCTTTCGAGTGTAATGATTCATGCAACACGACCATTTGTGCTAAATGAATGGATTCAGACAAAGATTGATGGATATGAAGTTTCTGGAACGGTTGAGCACGTCGGTTGGTGGTCGCCAACCATTATCCGAGGCGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACTGTTAGTATTGTGAGAAATCTTACCCAAAAGACTCATTGGCGTATCAAGACTCATCTAGCCATCAGCCACTTGGATGTTAATAAGATTAATTATATTGTAGCTGATATGCGGAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACATCGTCGAATTTTTCTGGATAACGTCAATCCCGAAAACCAGGCTCTTATGATTATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCATCACAGGGCACGGCTTGCGACACCTATTCGCACAGTTCAGAAAATATATGCTGAAGCTGACTTGGAGAATGTACCATTTTCCGAGACCATGTATTCTCGTACCGGCGCAACTAACCGTCCTCTGCTTCTTATCGAGCCATCTTATAAAGTCAATGGCGATGATAAATCCAAAGTCTCTAGTCGTCCCACTCGCTCATCAAATGAAGAAAAAGACACCAAACAAGAGGGTGTCTCCATGCCAGGAACGAAAGCTCCCGACACAGCTGCATCAACAGCAAACCTTGATACGAAAACAGATGACAAAAAATCAACTTCTCCATCTGTTACAGCAGCTAAGCCATCAACATCGACCAATACGCCAGAGCAAAGCAGCATAGAAAAGACAGTAACAAGCAATGAGGTAAAAGGAGAAAAGAAAGATCTCACAGGACAGAATTCCAAGGATAATATGCCACGAGTGACACCACCGAAAAGGCCGTCTTCCGCTTCTGGTCCCGGCGGCGAGAAACCTGATATTTCCGCATCGCCACCGGTGACCCGAGCACCATTGGAAGAGAACATTGTGCTGGGAGTTGCATTGGAAGGCTCCAAAAGAACTCTTCCAATTGATGAAGATTTGGATTCAAAAGAAATATCCACACAGAGAAATGGAGATATGAAAGATGGCCAAATGCCTGCAGTTCCGGGTGCTACAAAAAATGATTGA | 2055 | 43.75 | MLNPTMVHPSSSQFSHKLGIQSVHGRNKLHINGKGKARLHLVTIVPSSHGLRLDSGSLQLLRSASRPTTYPVSPRTNVFVCRSVLESSGGVGSAVLKSAAVVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYYLTTSYVQPLLLWTGATLICRALDPIVLPSVASQAVKQRLLNFVRSLSTVLAFAYCISSLIQQVHKFASESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVLNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYAEADLENVPFSETMYSRTGATNRPLLLIEPSYKVNGDDKSKVSSRPTRSSNEEKDTKQEGVSMPGTKAPDTAASTANLDTKTDDKKSTSPSVTAAKPSTSTNTPEQSSIEKTVTSNEVKGEKKDLTGQNSKDNMPRVTPPKRPSSASGPGGEKPDISASPPVTRAPLEENIVLGVALEGSKRTLPIDEDLDSKEISTQRNGDMKDGQMPAVPGATKND | 684 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1513413 | 1520095 | + | Sed0009160.1 | Sed04g0205 | 708808 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0205 | 684 | MobiDBLite | consensus disorder prediction | 497 | 684 | - | - | |
Sed04g0205 | 684 | MobiDBLite | consensus disorder prediction | 553 | 580 | - | - | |
Sed04g0205 | 684 | MobiDBLite | consensus disorder prediction | 500 | 526 | - | - | |
Sed04g0205 | 684 | SUPERFAMILY | Sm-like ribonucleoproteins | 288 | 358 | IPR010920 | - | |
Sed04g0205 | 684 | PANTHER | OW CONDUCTANCE MECHANOSENSITIVE CHANNEL | 6 | 671 | IPR045042 | - | |
Sed04g0205 | 684 | Gene3D | - | 304 | 359 | IPR023408 | - | |
Sed04g0205 | 684 | Pfam | Mechanosensitive ion channel, beta-domain | 288 | 358 | IPR006685 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed04g0205 | 684 | MobiDBLite | consensus disorder prediction | 648 | 666 | - | - | |
Sed04g0205 | 684 | Gene3D | - | 200 | 302 | - | - | |
Sed04g0205 | 684 | MobiDBLite | consensus disorder prediction | 581 | 595 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1410 | Sed-Chr3:8957726 | Sed04g0205 | Sed-Chr4:1513413 | 0.00E+00 | dispersed | |
Sed04g0205 | Sed-Chr4:1513413 | Sed13g1077 | Sed-Chr13:9359658 | 7.70E-189 | dispersed | |
Sed03g1409 | Sed-Chr3:8957726 | Sed04g0205 | Sed-Chr4:1513413 | 1.9e-310 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0205 | K22047 | - | csv:101213477 | 1163.29 |