Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0205 ATGCTCAACCCAACAATGGTTCATCCTAGTTCTTCCCAATTTTCACATAAACTGGGGATTCAAAGTGTTCATGGACGCAATAAGTTACATATTAATGGCAAGGGAAAGGCTCGACTACATCTTGTTACTATCGTTCCTTCATCACACGGTCTGAGGCTTGATTCTGGAAGTCTTCAGCTCTTACGCAGTGCAAGTCGCCCAACAACGTATCCTGTGTCTCCAAGAACAAATGTTTTTGTGTGTAGATCTGTTCTGGAATCAAGTGGTGGAGTAGGGTCTGCTGTTCTTAAGTCTGCAGCTGTGGTTTTGACAAGATCTTATGATGCTTTACGTGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATTCTATTTCTTCATGAGCCAGATGGCAGTTGGAAGAAAAGCAGTACATACTATCTTACGACTTCGTACGTTCAGCCTCTACTGCTGTGGACTGGAGCTACATTGATCTGCAGGGCATTGGATCCAATTGTTTTACCGTCGGTAGCCAGTCAGGCCGTCAAACAACGACTTCTCAATTTTGTCAGATCGTTATCTACTGTTCTGGCATTTGCCTATTGTATATCAAGCTTGATTCAACAAGTACACAAATTCGCCAGTGAATCAAATGACTCGAGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCTCTTTCACTGTTCATGGAGTTGCTAGGGTTTTCTACCCAGAAGTGGCTCACAGCTGGGGGTCTTGGAACTGTATTGCTTACCCTTGCTGGTCGTGAGATATTTACTAACTTTCTTTCGAGTGTAATGATTCATGCAACACGACCATTTGTGCTAAATGAATGGATTCAGACAAAGATTGATGGATATGAAGTTTCTGGAACGGTTGAGCACGTCGGTTGGTGGTCGCCAACCATTATCCGAGGCGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACTGTTAGTATTGTGAGAAATCTTACCCAAAAGACTCATTGGCGTATCAAGACTCATCTAGCCATCAGCCACTTGGATGTTAATAAGATTAATTATATTGTAGCTGATATGCGGAAAGTTTTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACATCGTCGAATTTTTCTGGATAACGTCAATCCCGAAAACCAGGCTCTTATGATTATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTGTGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCATCACAGGGCACGGCTTGCGACACCTATTCGCACAGTTCAGAAAATATATGCTGAAGCTGACTTGGAGAATGTACCATTTTCCGAGACCATGTATTCTCGTACCGGCGCAACTAACCGTCCTCTGCTTCTTATCGAGCCATCTTATAAAGTCAATGGCGATGATAAATCCAAAGTCTCTAGTCGTCCCACTCGCTCATCAAATGAAGAAAAAGACACCAAACAAGAGGGTGTCTCCATGCCAGGAACGAAAGCTCCCGACACAGCTGCATCAACAGCAAACCTTGATACGAAAACAGATGACAAAAAATCAACTTCTCCATCTGTTACAGCAGCTAAGCCATCAACATCGACCAATACGCCAGAGCAAAGCAGCATAGAAAAGACAGTAACAAGCAATGAGGTAAAAGGAGAAAAGAAAGATCTCACAGGACAGAATTCCAAGGATAATATGCCACGAGTGACACCACCGAAAAGGCCGTCTTCCGCTTCTGGTCCCGGCGGCGAGAAACCTGATATTTCCGCATCGCCACCGGTGACCCGAGCACCATTGGAAGAGAACATTGTGCTGGGAGTTGCATTGGAAGGCTCCAAAAGAACTCTTCCAATTGATGAAGATTTGGATTCAAAAGAAATATCCACACAGAGAAATGGAGATATGAAAGATGGCCAAATGCCTGCAGTTCCGGGTGCTACAAAAAATGATTGA 2055 43.75 MLNPTMVHPSSSQFSHKLGIQSVHGRNKLHINGKGKARLHLVTIVPSSHGLRLDSGSLQLLRSASRPTTYPVSPRTNVFVCRSVLESSGGVGSAVLKSAAVVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYYLTTSYVQPLLLWTGATLICRALDPIVLPSVASQAVKQRLLNFVRSLSTVLAFAYCISSLIQQVHKFASESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVLNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYAEADLENVPFSETMYSRTGATNRPLLLIEPSYKVNGDDKSKVSSRPTRSSNEEKDTKQEGVSMPGTKAPDTAASTANLDTKTDDKKSTSPSVTAAKPSTSTNTPEQSSIEKTVTSNEVKGEKKDLTGQNSKDNMPRVTPPKRPSSASGPGGEKPDISASPPVTRAPLEENIVLGVALEGSKRTLPIDEDLDSKEISTQRNGDMKDGQMPAVPGATKND 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1513413 1520095 + Sed0009160.1 Sed04g0205 708808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0205 684 MobiDBLite consensus disorder prediction 497 684 - -
Sed04g0205 684 MobiDBLite consensus disorder prediction 553 580 - -
Sed04g0205 684 MobiDBLite consensus disorder prediction 500 526 - -
Sed04g0205 684 SUPERFAMILY Sm-like ribonucleoproteins 288 358 IPR010920 -
Sed04g0205 684 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 6 671 IPR045042 -
Sed04g0205 684 Gene3D - 304 359 IPR023408 -
Sed04g0205 684 Pfam Mechanosensitive ion channel, beta-domain 288 358 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g0205 684 MobiDBLite consensus disorder prediction 648 666 - -
Sed04g0205 684 Gene3D - 200 302 - -
Sed04g0205 684 MobiDBLite consensus disorder prediction 581 595 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1410 Sed-Chr3:8957726 Sed04g0205 Sed-Chr4:1513413 0.00E+00 dispersed
Sed04g0205 Sed-Chr4:1513413 Sed13g1077 Sed-Chr13:9359658 7.70E-189 dispersed
Sed03g1409 Sed-Chr3:8957726 Sed04g0205 Sed-Chr4:1513413 1.9e-310 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0205 K22047 - csv:101213477 1163.29