Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0209 ATGAAAGCCAATTTCCCTCACCCCAAGAGCAAAACTTCCAATATGTTATCCAAGTTCCATCTACCCGACCCGTTTACCCATCAACCCGACGATCACTCCGCCGTGCCGCCGCCGCCGTTCAATCACGGCATCTCCACCTCCTCCGCCACCGACGGCTCCACAATCGAAGTGGTGAGGCGGCCGAGGGGCCGCCCACCGGGTTCCAAGAACCGCCCGAAACCGCCTCTCTTCATAACCCGAGAAGCCGAACCGGCGATGCGGCCGTACGTTCTTGAAGTACCGGGCGGAAGCGACGTCGTTGAAGCCATCACGCGGTTTTGCCGCCGGAAGAATTTGGGGCTTTGCGTACTAACCGCCTCCGGCACGGTTGCTAACGTCTCTCTCCGGCAACCCTCCGCCTCACCCGCCGCCGCCGTTACTTTTCACGGCCGGTTTGAGATCCTCTCCGTTTCCGCTACCGTTTTGCCTCAAACGACGCCGTTTCATATTCCCGACAGCTTCTCTATCTCCCTCGCCGGACCTCAGGGGCAGATCGTCGGCGGCCTTGTCGCCGGCGCGTTGATAGCCGCCGGCACCGTTTTTGTCGTCGCCTCTTCGTTTGATAATCCATTGTACCACCGCCTCCCCGATGAGAATTTGGGTTCCGGCGGTAGCGCCGGCGAGGTTCATTCGCCACGTGTCTCCGGCGGCGGAGATAGTAACGGACACGGACACGGACACGGGCAGGGGCAGAGTCACGGGCAGCAACTTGTGGAATCGTGTGGGGTGGCTATGTATAGTTGCCACGCGCCGTCCGATGTAATATGGGCGCCGACGGCGAGGCAACCGCCGCCGCCGCCGCCGTACTAA 849 61.37 MKANFPHPKSKTSNMLSKFHLPDPFTHQPDDHSAVPPPPFNHGISTSSATDGSTIEVVRRPRGRPPGSKNRPKPPLFITREAEPAMRPYVLEVPGGSDVVEAITRFCRRKNLGLCVLTASGTVANVSLRQPSASPAAAVTFHGRFEILSVSATVLPQTTPFHIPDSFSISLAGPQGQIVGGLVAGALIAAGTVFVVASSFDNPLYHRLPDENLGSGGSAGEVHSPRVSGGGDSNGHGHGHGQGQSHGQQLVESCGVAMYSCHAPSDVIWAPTARQPPPPPPY 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1561219 1562498 + Sed0019274.1 Sed04g0209 708812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0209 282 PIRSF ESCAROLA 7 281 IPR014476 GO:0003680(InterPro)
Sed04g0209 282 CDD DUF296 87 200 IPR005175 -
Sed04g0209 282 FunFam AT-hook motif nuclear-localized protein 87 218 - -
Sed04g0209 282 MobiDBLite consensus disorder prediction 211 248 - -
Sed04g0209 282 Pfam Plants and Prokaryotes Conserved (PCC) domain 87 202 IPR005175 -
Sed04g0209 282 MobiDBLite consensus disorder prediction 1 76 - -
Sed04g0209 282 Gene3D - 86 218 - -
Sed04g0209 282 ProSiteProfiles PPC domain profile profile. 83 221 IPR005175 -
Sed04g0209 282 MobiDBLite consensus disorder prediction 40 54 - -
Sed04g0209 282 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 47 246 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed04g0209 282 SUPERFAMILY AF0104/ALDC/Ptd012-like 85 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0209 Sed-Chr4:1561219 Sed05g1564 Sed-Chr5:29402132 5.30E-67 dispersed
Sed13g1540 Sed-Chr13:20571011 Sed04g0209 Sed-Chr4:1561219 5.30E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0209 - - - 0.0