Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0227 ATGGCCGCCGCCGCCGTGCCGGAAAATCTCTCCCGCGACCAGTACGTGTACCTATCGAAGCTTGCCGAGCAGGCCGAAAGGTACGAGGAGATGGTTCAGTTCATGCAGAAACTCGTTCTTGGCTCAACCCCCGGCTCCGAGCTCTCCGTCGAGGAGCGGAATCTTCTCTCCGTTGCTTACAAGAACGTGATCGGATCACTCCGAGCCGCTTGGCGTATCGTCTCCTCCATCGAGCAGAAGGAGGAGAGCCGTAAGAATGAAGAACACGTTGTTCTTGTCAAGGATTACAGATCAAAAGTTGAATCTGAACTTTCCGAGATCTGTGCGAGTATTTTGCAGCTTCTGGACTCGAATCTTGTTCCGTCGGCTTCTGCCAGTGAATCTAAGGTCTTCTACTTGAAGATGAAGGGGGATTACCATCGGTATTTGGCGGAGTTTAAGGTCGGAGATGAGAGGAAAGCTGCTGCCGAGGATACTATGCTGGCTTACAGAGCTGCTCAGGATGTGGCAGGTGCGGATCTTGCACCCACTCATCCGATAAGGCTCGGGCTCGCACTCAATTTCTCTGTGTTTTACTTCGAGATTCTGAATCAGTCTGATAAAGCATGTACCATGGCCAAGGAGGCATTTGAGGAAGCTATTGCTGAGCTGGACACTTTGGGTGAAGAATCATACAAAGACAGTACCCTCATCATGCAGCTGTTAAGGGACAACCTCACTCTCTGGACTTCAGATGCCCAGGACCAGTTAGATGAATCATAG 762 50.92 MAAAAVPENLSRDQYVYLSKLAEQAERYEEMVQFMQKLVLGSTPGSELSVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEESRKNEEHVVLVKDYRSKVESELSEICASILQLLDSNLVPSASASESKVFYLKMKGDYHRYLAEFKVGDERKAAAEDTMLAYRAAQDVAGADLAPTHPIRLGLALNFSVFYFEILNQSDKACTMAKEAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDAQDQLDES 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1648824 1652459 + Sed0025363.1 Sed04g0227 708830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0227 253 SUPERFAMILY 14-3-3 protein 11 245 IPR036815 -
Sed04g0227 253 PANTHER 14-3-3 PROTEIN 12 248 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Sed04g0227 253 Coils Coil 18 38 - -
Sed04g0227 253 PIRSF 14-3-3 7 253 IPR000308 -
Sed04g0227 253 PRINTS 14-3-3 protein zeta signature 47 76 IPR000308 -
Sed04g0227 253 PRINTS 14-3-3 protein zeta signature 189 215 IPR000308 -
Sed04g0227 253 PRINTS 14-3-3 protein zeta signature 127 149 IPR000308 -
Sed04g0227 253 PRINTS 14-3-3 protein zeta signature 162 188 IPR000308 -
Sed04g0227 253 PRINTS 14-3-3 protein zeta signature 96 120 IPR000308 -
Sed04g0227 253 PRINTS 14-3-3 protein zeta signature 216 245 IPR000308 -
Sed04g0227 253 ProSitePatterns 14-3-3 proteins signature 1. 53 63 IPR023409 -
Sed04g0227 253 SMART 1433_4 12 252 IPR023410 -
Sed04g0227 253 ProSitePatterns 14-3-3 proteins signature 2. 225 244 IPR023409 -
Sed04g0227 253 FunFam 14-3-3 protein epsilon 9 253 - -
Sed04g0227 253 Gene3D - 2 253 IPR036815 -
Sed04g0227 253 Pfam 14-3-3 protein 19 243 IPR023410 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0227 Sed-Chr4:1648824 Sed13g2141 Sed-Chr13:26046387 9.40E-100 dispersed
Sed03g1432 Sed-Chr3:9082286 Sed04g0227 Sed-Chr4:1648824 3.30E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0227 K06630 - csv:101222827 474.167