Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0231 ATGGAGCTCGACGAAAACTTCATCTTAGAAGAGTTGATGGCTCTACGAAGAGAACCAAATTGGAATGCAATTCCATCGGAAATCACCGATCTCTGCTCAAATGGCTGGACATTCGACTACTGTTTCGATCAAACCACAGCCGAGTTCCCCCAAAACTCTTCATCGGAACCTCTGAATCTCGACGAGTTCTACCATCCTTTGGCGAACGAGTTCTCCGTTCCACAAATGGCCGATTCCGCCTTCGCCGCCATGGAAGCAGCCGCGCCTCTGCCATTCCAAGCAGAGCGAGAAGGAGCGGAAAAGGAAGAGAAAAGCGAATTAGGTTTTCTCGCGGATGAGATTCGGAACATGGAGGCGGTTCAAGTTCATTCGGCTTGCAAAACGGAGCCGGAACTGTCCGCTTTCAACGTCGGAACGTGCTCTCTCGATCGGAAGAACAGATCGAGGAAATCGCAAGGCCAACCGTCGAAGAATCTCATGGCGGAGAGAAGGAGAAGGAAGCGGTTGAACGATCGCCTCTCGATGCTCAGATCTATCGTTCCTAAGATCAGTAAGATGGACCGAACAGCGATTCTTGCAGATGCAATCGCATACACGAAGGAGTTGCTGGAGAAGATCGGGAATCTACAAGGAGAAGTGGATCGTAATCCGAAACCGAGCGAGTTCGTGAGGAATTCACCAAAATTTGAGGTGGAGAGCAGAAACGGAAGCACGAGGATCGAGATTTGCTGTGGGGCGAAACCAGGATTGGTGTTGTCGACGGTGAATACGATTGAAGCATTGGGGCTTGAGATTCAACACTGTGTGATTAGCTGCTTCGCTGATTTCGCACTGCAAGCCACCTGTTCTCATCAGGTAATTGCTTCCCCCTTCTTACACGCACCTCATTTCTACTTAATTCCCAATTTACTTACAATATTTATATATATCTTCATTGATTGA 942 48.51 MELDENFILEELMALRREPNWNAIPSEITDLCSNGWTFDYCFDQTTAEFPQNSSSEPLNLDEFYHPLANEFSVPQMADSAFAAMEAAAPLPFQAEREGAEKEEKSELGFLADEIRNMEAVQVHSACKTEPELSAFNVGTCSLDRKNRSRKSQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIAYTKELLEKIGNLQGEVDRNPKPSEFVRNSPKFEVESRNGSTRIEICCGAKPGLVLSTVNTIEALGLEIQHCVISCFADFALQATCSHQVIASPFLHAPHFYLIPNLLTIFIYIFID 313
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 1681461 1683647 + Sed0025453.2 Sed04g0231 708834
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0231 313 MobiDBLite consensus disorder prediction 143 165 - -
Sed04g0231 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 218 IPR036638 GO:0046983(InterPro)
Sed04g0231 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983(InterPro)
Sed04g0231 313 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 124 282 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed04g0231 313 Pfam Helix-loop-helix DNA-binding domain 160 202 IPR011598 GO:0046983(InterPro)
Sed04g0231 313 SMART finulus 159 208 IPR011598 GO:0046983(InterPro)
Sed04g0231 313 Gene3D - 143 218 IPR036638 GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1438 Sed-Chr3:9170858 Sed04g0231 Sed-Chr4:1681461 1.00E-92 dispersed
Sed04g0231 Sed-Chr4:1681461 Sed05g1529 Sed-Chr5:29050659 4.90E-66 dispersed
Sed04g0230 Sed-Chr4:1681461 Sed04g0231 Sed-Chr4:1681461 3.40E-160 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38015 PF00010 HLH 3.10E-08 No_clan Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0231 - - - 0.0