Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g0231 | ATGGAGCTCGACGAAAACTTCATCTTAGAAGAGTTGATGGCTCTACGAAGAGAACCAAATTGGAATGCAATTCCATCGGAAATCACCGATCTCTGCTCAAATGGCTGGACATTCGACTACTGTTTCGATCAAACCACAGCCGAGTTCCCCCAAAACTCTTCATCGGAACCTCTGAATCTCGACGAGTTCTACCATCCTTTGGCGAACGAGTTCTCCGTTCCACAAATGGCCGATTCCGCCTTCGCCGCCATGGAAGCAGCCGCGCCTCTGCCATTCCAAGCAGAGCGAGAAGGAGCGGAAAAGGAAGAGAAAAGCGAATTAGGTTTTCTCGCGGATGAGATTCGGAACATGGAGGCGGTTCAAGTTCATTCGGCTTGCAAAACGGAGCCGGAACTGTCCGCTTTCAACGTCGGAACGTGCTCTCTCGATCGGAAGAACAGATCGAGGAAATCGCAAGGCCAACCGTCGAAGAATCTCATGGCGGAGAGAAGGAGAAGGAAGCGGTTGAACGATCGCCTCTCGATGCTCAGATCTATCGTTCCTAAGATCAGTAAGATGGACCGAACAGCGATTCTTGCAGATGCAATCGCATACACGAAGGAGTTGCTGGAGAAGATCGGGAATCTACAAGGAGAAGTGGATCGTAATCCGAAACCGAGCGAGTTCGTGAGGAATTCACCAAAATTTGAGGTGGAGAGCAGAAACGGAAGCACGAGGATCGAGATTTGCTGTGGGGCGAAACCAGGATTGGTGTTGTCGACGGTGAATACGATTGAAGCATTGGGGCTTGAGATTCAACACTGTGTGATTAGCTGCTTCGCTGATTTCGCACTGCAAGCCACCTGTTCTCATCAGGTAATTGCTTCCCCCTTCTTACACGCACCTCATTTCTACTTAATTCCCAATTTACTTACAATATTTATATATATCTTCATTGATTGA | 942 | 48.51 | MELDENFILEELMALRREPNWNAIPSEITDLCSNGWTFDYCFDQTTAEFPQNSSSEPLNLDEFYHPLANEFSVPQMADSAFAAMEAAAPLPFQAEREGAEKEEKSELGFLADEIRNMEAVQVHSACKTEPELSAFNVGTCSLDRKNRSRKSQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILADAIAYTKELLEKIGNLQGEVDRNPKPSEFVRNSPKFEVESRNGSTRIEICCGAKPGLVLSTVNTIEALGLEIQHCVISCFADFALQATCSHQVIASPFLHAPHFYLIPNLLTIFIYIFID | 313 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1681461 | 1683647 | + | Sed0025453.2 | Sed04g0231 | 708834 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g0231 | 313 | MobiDBLite | consensus disorder prediction | 143 | 165 | - | - | |
| Sed04g0231 | 313 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 156 | 218 | IPR036638 | GO:0046983(InterPro) | |
| Sed04g0231 | 313 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 153 | 202 | IPR011598 | GO:0046983(InterPro) | |
| Sed04g0231 | 313 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 124 | 282 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
| Sed04g0231 | 313 | Pfam | Helix-loop-helix DNA-binding domain | 160 | 202 | IPR011598 | GO:0046983(InterPro) | |
| Sed04g0231 | 313 | SMART | finulus | 159 | 208 | IPR011598 | GO:0046983(InterPro) | |
| Sed04g0231 | 313 | Gene3D | - | 143 | 218 | IPR036638 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g1438 | Sed-Chr3:9170858 | Sed04g0231 | Sed-Chr4:1681461 | 1.00E-92 | dispersed | |
| Sed04g0231 | Sed-Chr4:1681461 | Sed05g1529 | Sed-Chr5:29050659 | 4.90E-66 | dispersed | |
| Sed04g0230 | Sed-Chr4:1681461 | Sed04g0231 | Sed-Chr4:1681461 | 3.40E-160 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 38015 | PF00010 | HLH | 3.10E-08 | No_clan | Sed | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g0231 | - | - | - | 0.0 |