Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0234 ATGGGTACTGGTTGGAGAAAAGCTTTTTGTACCACCATTTCTCGAGATTCAAACTCCAACAATGTCGCTCAAAAACAGAGCACTTCTTCTCCGTCGACAAATCCCAGCCCTAGAAGCTGCGTTCGATTGGGTTTCTTCAGCAACCCTTCTACTCCTCGCTCCGGTCTCCGTTGCCGTACAACTCACAGCGCCGTCGAGAAACCGGCCGGAGCTCCGGCCAAATCCCAGCGCGGAATTGTGGGGTCCAACCCTTCTTCCCCTCGTTCCCCTCTTAAGCTTTCTCTCTTCAAGAGCAGCTTCAAGTTCAGGAGTAGCTGTGGAATCTGTTTAAGCAGTGTGAAAACGGGACATGGGACGGCGATTTACACGGCGGAGTGTGCTCATGCGTTTCATTTTCCTTGTATTGCCGATTATGTAAGAAATCATGGAAATCTGATTTGCCCTGTTTGTAACAGGGAATGGAAAGATGTTCCTCTGCTTTCTGCTCATAAGAATTTGGGCTCATTTTCTCAAAATGGTTCCAAATCGATTGTTGAAGATAAACCCATGATAGATTCTTCTCCGAGAGGGATGAAATCCAAGAACGACCGGAATCGACAATACCCAGAAGAGAAGCCGGTGAAATTCAGATCGTACGATGACGACGAGCCGCTTTTGTCCCCCACCACCGGCGGCCGGATTAATCCCATCCCGGAATACGACGAGAATTGTAATGGTGAAAATGACGACGTTGAAGAATTTCAAGGATTTTTTGCGTATCCAAGACCGGTGAAATCTTCAAAACAGAGGACCAATGTGCAGGTCCGGCTCGTACCTGAAACGGCGTTGATTTCATCCGGTCACATTTACGAGACCTACGCGGTGGCTTTGAGAGTGAAGGCGCCGCCGCCACTCGCCGGAAAAAGAGGAACCCCCAATTTATTAAACCCATCCCGCCGTGCGCCGGTCGATTTAGTAGCGGTGGTAGACGTAAACGGAAACATGGCCGGAGCCAAATTGACGATGCTTAAACGCGCTTTGCATATGGTCATTTCGACGTTAGGCTCGTCGGACCGGTTCGCCGTCGTGGCCTTTTCCGGCAACGCAAAAAGGATGTTGCCGTTGACAAGAATGACAGCTCACGGCCAACACGCCGCCCGGCGCGTGATTTACACGTTGGTTTGCAGCCAAGGAACCGGCGTTAAGGAAGCTTTGAGAAAAGCCACAAAAGTATTAGAAGACCGGCGGGAGAAAAACCCGGTTGCTACCATCATGCTGCTAACCGATTCGAATAACCGATACGGTCCACGACAAGACCCATCGACGTCCCGATTAGGCCTCATCGAGATTCCGGTTCACGCATTCGGGTTCGGGGAGGGACGCGGTTACAACCAAGAACCGGCGAAGGATGGCTTTGAAAAATGCATCAGCGATTTATTGAGTGTCGTGGTTCAAGACCTTCGAATTCAACTCGGCTTCCCGACCGGTTCTTCCCTGGCCGTAATCTCTGCTATTTATTCTTGCACTGACCGGCCCACGGTCTGCAGCTTGGGTTCGGTCCGGCTCGGTGATTTATACGCCGAGGAGGAAAGGGAATTACTCGTGGAGCTGAAGATTCCCACGTCAGCTGCTGGACCCCACCACGTGATGACGATGCAGTGCCTTTACAAGGACCCATCGACGCGAGAAGTAGTCTACAGCCGGGAACAGAGCAAACTGAGCTTATCCGCCGTCCGATCATCCGGGCCGAAAATCGAAGGGCTCAGAAACAAGTTCATAACGACACGCGCTGTGGCGGAATCCAGGAGATTAATCGAGTACGGCGATGATACGAGCGCGCATCAATTACTCGTGTCGGCGCGTGGGTTACTAACGCAGTCGGGATCGGCGGGTGCTGACGTGTACGTGCGTGAGGTGGAAGTCGAGCTGGCAGAACTCCATTGGCGGAGGCAGCAACAGCAAATAATGACAACAAAAACGCCACGTAGGAGCGGCGGCGGAAAGGAAGCTCCGGCGGCGGCGATGGTGGACGAAAACGGAGATCCTTTGACGCCGACGTCGGCGTGGAGGGCTGCGGAGAGGCTGGCGAGAGTGGCGATTATGAAAAAATCGTTGACGAGTAAAATTGGAGATTTACACGGCTTTGAAAATGCGAGGTTTTAG 2142 52.19 MGTGWRKAFCTTISRDSNSNNVAQKQSTSSPSTNPSPRSCVRLGFFSNPSTPRSGLRCRTTHSAVEKPAGAPAKSQRGIVGSNPSSPRSPLKLSLFKSSFKFRSSCGICLSSVKTGHGTAIYTAECAHAFHFPCIADYVRNHGNLICPVCNREWKDVPLLSAHKNLGSFSQNGSKSIVEDKPMIDSSPRGMKSKNDRNRQYPEEKPVKFRSYDDDEPLLSPTTGGRINPIPEYDENCNGENDDVEEFQGFFAYPRPVKSSKQRTNVQVRLVPETALISSGHIYETYAVALRVKAPPPLAGKRGTPNLLNPSRRAPVDLVAVVDVNGNMAGAKLTMLKRALHMVISTLGSSDRFAVVAFSGNAKRMLPLTRMTAHGQHAARRVIYTLVCSQGTGVKEALRKATKVLEDRREKNPVATIMLLTDSNNRYGPRQDPSTSRLGLIEIPVHAFGFGEGRGYNQEPAKDGFEKCISDLLSVVVQDLRIQLGFPTGSSLAVISAIYSCTDRPTVCSLGSVRLGDLYAEEERELLVELKIPTSAAGPHHVMTMQCLYKDPSTREVVYSREQSKLSLSAVRSSGPKIEGLRNKFITTRAVAESRRLIEYGDDTSAHQLLVSARGLLTQSGSAGADVYVREVEVELAELHWRRQQQQIMTTKTPRRSGGGKEAPAAAMVDENGDPLTPTSAWRAAERLARVAIMKKSLTSKIGDLHGFENARF 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1746904 1749508 + Sed0011559.1 Sed04g0234 708837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0234 713 ProSiteProfiles Zinc finger RING-type profile. 106 151 IPR001841 -
Sed04g0234 713 MobiDBLite consensus disorder prediction 171 231 - -
Sed04g0234 713 MobiDBLite consensus disorder prediction 63 89 - -
Sed04g0234 713 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 103 711 IPR051266 -
Sed04g0234 713 MobiDBLite consensus disorder prediction 16 38 - -
Sed04g0234 713 Gene3D von Willebrand factor, type A domain 317 470 IPR036465 -
Sed04g0234 713 ProSiteProfiles VWFA domain profile. 317 452 IPR002035 -
Sed04g0234 713 SUPERFAMILY RING/U-box 105 156 - -
Sed04g0234 713 MobiDBLite consensus disorder prediction 645 675 - -
Sed04g0234 713 Pfam von Willebrand factor type A domain 318 423 IPR002035 -
Sed04g0234 713 SUPERFAMILY vWA-like 313 457 IPR036465 -
Sed04g0234 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 160 IPR013083 -
Sed04g0234 713 SMART ring_2 106 150 IPR001841 -
Sed04g0234 713 SMART VWA_4 315 481 IPR002035 -
Sed04g0234 713 Pfam Ring finger domain 105 151 IPR001841 -
Sed04g0234 713 MobiDBLite consensus disorder prediction 185 215 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0234 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0234 Sed-Chr4:1746904 Sed05g2831 Sed-Chr5:39513264 7.80E-75 dispersed
Sed10g0792 Sed-Chr10:5614831 Sed04g0234 Sed-Chr4:1746904 1.50E-144 wgd
Sed03g1439 Sed-Chr3:9211259 Sed04g0234 Sed-Chr4:1746904 3.10E-273 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g562 Blo01g01789 . Bda01g00923 . Bpe02g00152 . . Bma01g02574 Cmo05g00592 . . . . . Sed04g0234 . . Bhi04g00900 Tan02g2512 Cmetu03g0168 . Hepe10g0402 . . Cla08g01186 Cam08g1651 Cec08g1227 Cco08g1346 Clacu08g1347 . Cre08g1133 . . Cone17ag1157 Cone20ag0572 . . . . Blo17g00085 Blo18g00728 . Bda13g01346 Bpe02g01168 Bpe14g00499 Bma01g01363 Bma02g00100 . . . . Cma05g00566 . . . . . . . . . . . . . . . . . . Lsi08g01049 Csa02g02233 Chy03g01284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001939 4 2 3 5 5 2 0 2 2 2 2 2 4 0 2 3 2 2 0 2 2 2 2 2 1 1 2 3 2 3 66