Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0236 ATGCAAGATCCGCCGCCAAACCCCAACTCCGATCACTCCATCTCCGGCGACAATGCTGCAACGCCCAACCCTCATCTCCCACCACCGCCGCCGCCGCCGTCCGCTTCCACCAGCCCTCACCACCGCCGAGCCCACTCCGAACTCAGCTTCCGCTTCCCCGATGACATCACGGATCTCTCTTCTTCCGATCCCTTCATCGCCGAGATCGGATCTGAGGACGACATCCTCTTCTCCACCTTCATCGACGTCGACAAGCTTGGCTCTGCCACCTCTGCTGATTTCGAGGCTCGGAACCTGAACAATCCTAGACCTAGGCATCGATACAGCAGCTCGGTTGATGGTTGTGCTTCTACCAGTGCGTTTGGGGATGTATTGGACGCCAAGAAAGCAATGCCGCCTGATAAACTAGCCGAGCTTTGGACTCTTGATCCCAAGCGCGCCAAAAGGATTTTGGCCAATCGACAGTCTGCTGTCCGTTCTAAAGAGAGGAAATCACGATACATACAGGAGCTTGAGCACAAAGTTCGCACCCTTCAAACAGAGGCAACAACTCTTTCAGCTCAACTCACGCTGTTCCAGAGGGATACAACTGGTCTTGGTACTGAAAATGCAGAACTTAAGTTCCGGTTGCAGGCTATGGAACAACAGGCTCATTTGCGAGATGCCTTGAATGATGCACTAAAGAAGGAAGTTGAGAGGATCAAATTTGCCACGGGAGAGACATCGAGCGGCTCCGATTTCTTCAACTTGGGAATAATGCCTCAAATGCCATATTTAGCATCGAGTTTCTTTCCCCTTCATCAGCAACCAGTTTTAGCTAGCACCCACAATATGCAGCTGCCATCAAACATGTCAATGCATCATCAGTCGAATACACATCGATTCGTTGATACTATGCAGAGCGATCCTCTCGGTCGATTACAGGGTCTTGATATCAGAAGCAACAGATCTCCTCTGGCGAAACCGGACGTGCCCTCTCTGTCTACCAGCGAAACTAGCGCCACATTTTGA 1011 51.53 MQDPPPNPNSDHSISGDNAATPNPHLPPPPPPPSASTSPHHRRAHSELSFRFPDDITDLSSSDPFIAEIGSEDDILFSTFIDVDKLGSATSADFEARNLNNPRPRHRYSSSVDGCASTSAFGDVLDAKKAMPPDKLAELWTLDPKRAKRILANRQSAVRSKERKSRYIQELEHKVRTLQTEATTLSAQLTLFQRDTTGLGTENAELKFRLQAMEQQAHLRDALNDALKKEVERIKFATGETSSGSDFFNLGIMPQMPYLASSFFPLHQQPVLASTHNMQLPSNMSMHHQSNTHRFVDTMQSDPLGRLQGLDIRSNRSPLAKPDVPSLSTSETSATF 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1758993 1763757 - Sed0007908.1 Sed04g0236 708839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0236 336 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 143 206 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0236 336 FunFam probable transcription factor PosF21 144 197 - -
Sed04g0236 336 Coils Coil 161 188 - -
Sed04g0236 336 MobiDBLite consensus disorder prediction 306 336 - -
Sed04g0236 336 CDD bZIP_plant_RF2 146 195 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0236 336 SMART brlzneu 141 205 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0236 336 MobiDBLite consensus disorder prediction 1 20 - -
Sed04g0236 336 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 28 298 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed04g0236 336 MobiDBLite consensus disorder prediction 321 336 - -
Sed04g0236 336 Pfam bZIP transcription factor 145 191 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0236 336 SUPERFAMILY Leucine zipper domain 145 196 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0236 336 MobiDBLite consensus disorder prediction 22 37 - -
Sed04g0236 336 MobiDBLite consensus disorder prediction 1 45 - -
Sed04g0236 336 Gene3D - 144 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0799 Sed-Chr1:5921394 Sed04g0236 Sed-Chr4:1758993 4.70E-85 dispersed
Sed04g0236 Sed-Chr4:1758993 Sed04g0332 Sed-Chr4:2482575 9.00E-74 dispersed
Sed04g0236 Sed-Chr4:1758993 Sed05g3342 Sed-Chr5:42715804 1.90E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38018 PF00170 bZIP_1 4.00E-08 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0236 - - - 0.0