Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0236 | ATGCAAGATCCGCCGCCAAACCCCAACTCCGATCACTCCATCTCCGGCGACAATGCTGCAACGCCCAACCCTCATCTCCCACCACCGCCGCCGCCGCCGTCCGCTTCCACCAGCCCTCACCACCGCCGAGCCCACTCCGAACTCAGCTTCCGCTTCCCCGATGACATCACGGATCTCTCTTCTTCCGATCCCTTCATCGCCGAGATCGGATCTGAGGACGACATCCTCTTCTCCACCTTCATCGACGTCGACAAGCTTGGCTCTGCCACCTCTGCTGATTTCGAGGCTCGGAACCTGAACAATCCTAGACCTAGGCATCGATACAGCAGCTCGGTTGATGGTTGTGCTTCTACCAGTGCGTTTGGGGATGTATTGGACGCCAAGAAAGCAATGCCGCCTGATAAACTAGCCGAGCTTTGGACTCTTGATCCCAAGCGCGCCAAAAGGATTTTGGCCAATCGACAGTCTGCTGTCCGTTCTAAAGAGAGGAAATCACGATACATACAGGAGCTTGAGCACAAAGTTCGCACCCTTCAAACAGAGGCAACAACTCTTTCAGCTCAACTCACGCTGTTCCAGAGGGATACAACTGGTCTTGGTACTGAAAATGCAGAACTTAAGTTCCGGTTGCAGGCTATGGAACAACAGGCTCATTTGCGAGATGCCTTGAATGATGCACTAAAGAAGGAAGTTGAGAGGATCAAATTTGCCACGGGAGAGACATCGAGCGGCTCCGATTTCTTCAACTTGGGAATAATGCCTCAAATGCCATATTTAGCATCGAGTTTCTTTCCCCTTCATCAGCAACCAGTTTTAGCTAGCACCCACAATATGCAGCTGCCATCAAACATGTCAATGCATCATCAGTCGAATACACATCGATTCGTTGATACTATGCAGAGCGATCCTCTCGGTCGATTACAGGGTCTTGATATCAGAAGCAACAGATCTCCTCTGGCGAAACCGGACGTGCCCTCTCTGTCTACCAGCGAAACTAGCGCCACATTTTGA | 1011 | 51.53 | MQDPPPNPNSDHSISGDNAATPNPHLPPPPPPPSASTSPHHRRAHSELSFRFPDDITDLSSSDPFIAEIGSEDDILFSTFIDVDKLGSATSADFEARNLNNPRPRHRYSSSVDGCASTSAFGDVLDAKKAMPPDKLAELWTLDPKRAKRILANRQSAVRSKERKSRYIQELEHKVRTLQTEATTLSAQLTLFQRDTTGLGTENAELKFRLQAMEQQAHLRDALNDALKKEVERIKFATGETSSGSDFFNLGIMPQMPYLASSFFPLHQQPVLASTHNMQLPSNMSMHHQSNTHRFVDTMQSDPLGRLQGLDIRSNRSPLAKPDVPSLSTSETSATF | 336 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1758993 | 1763757 | - | Sed0007908.1 | Sed04g0236 | 708839 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0236 | 336 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 143 | 206 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0236 | 336 | FunFam | probable transcription factor PosF21 | 144 | 197 | - | - | |
Sed04g0236 | 336 | Coils | Coil | 161 | 188 | - | - | |
Sed04g0236 | 336 | MobiDBLite | consensus disorder prediction | 306 | 336 | - | - | |
Sed04g0236 | 336 | CDD | bZIP_plant_RF2 | 146 | 195 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0236 | 336 | SMART | brlzneu | 141 | 205 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0236 | 336 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Sed04g0236 | 336 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 28 | 298 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed04g0236 | 336 | MobiDBLite | consensus disorder prediction | 321 | 336 | - | - | |
Sed04g0236 | 336 | Pfam | bZIP transcription factor | 145 | 191 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0236 | 336 | SUPERFAMILY | Leucine zipper domain | 145 | 196 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0236 | 336 | MobiDBLite | consensus disorder prediction | 22 | 37 | - | - | |
Sed04g0236 | 336 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Sed04g0236 | 336 | Gene3D | - | 144 | 197 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0799 | Sed-Chr1:5921394 | Sed04g0236 | Sed-Chr4:1758993 | 4.70E-85 | dispersed | |
Sed04g0236 | Sed-Chr4:1758993 | Sed04g0332 | Sed-Chr4:2482575 | 9.00E-74 | dispersed | |
Sed04g0236 | Sed-Chr4:1758993 | Sed05g3342 | Sed-Chr5:42715804 | 1.90E-87 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38018 | PF00170 | bZIP_1 | 4.00E-08 | CL0018 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0236 | - | - | - | 0.0 |