Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0238 ATGGCTTCTAGCCGCTGCTTGAACACTTCTTGCGGCGCCCCCACCACGCCGGTCAATTGGATCAAAGGATGGCCTCTCGGATCCGCCGGATTCGCTCATCTCTGCCCCAACTGCGGATATGCTTATGAAAATTTAGTCTTCTGCGATAAGTTTCACTTGGAGGAAACTGGTTGGAGGGATTGCAGTTTTTGTGGCAAGAGAATTCACTGTGGATGTATAGCTTCTAAGTCTATGTTTGAATGTCTGGATTATGGAGGTATTGGGTGTACTAGCTGCATGAAAAGATCTCGACTTGATGTGCTTCGGAGAGCGAGAGATGAAATTTCTAATGGCTTTGATTCAGTGACAGTTGGTAATGTCGACCTTCTGCGACCTGCTTCTGTTGAGGATCAAGCGGTGCAAAATGGCATTAACAAGGAAAAGCTTTTACAACTGTGTAACATTATGGAAACAAATGAAACCGACCATTTGCAGCAATCTCAAAGAGTTGACAGAAGTGCATCTCCTGCACAAAACAGAGAAAATATCAGGAGCCCATTTAGGGAAGTTGGAACAAGCTTCTTTAATATGACTAAACTACCTGTTAAATGCCAGTCATCTATTGGTTCAATAATGTACTCCAAACTAGATACCAGCAGACCACACTTAGAACTAAAAGATATGCAAGAATCTCTGAGTCGGCCATCGTTAAATATAAGTTTGGGAGTTCCATTAGGCACACCAAACTTTGGGGTTCCCTTTTCAGGAAGTGCAGTTGAAGAGGATGAAAAGGGCATCCTGCCATTTCAGCAGGGGCAAAGATCTCGTCCAATTTTTCCCAAGCCCTTAAAAACAGGGATCACGGTTAATTCAGAAACAAGAAAGGGAATGGCTCCTCTGGTGCGTATTGCTCGGCCACCTGCTGAAGGTCGAGGTAAGAACCAACTTCTTCCAAGGTACTGGCCAAGGATTACTGACCAAGAGCTAGAACAATTATCTGGAGATTTGAATTCTACTATTGTTCCACTCTTTGAAAAGGTGCTGAGTGCTAGTGATGCTGGTCGAATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCTGAAGCATATTTTCCCCCTATCTCTCAATCAGAGGGTCTTCCAGTTAGGATTCAAGATGTTAAGGGGAATGAATGGACGTTTCAGTTCAGATTTTGGCCTAACAATAACAGCAGAATGTATGTTTTGGAGGGCGTAACCCCTTGCATACAATCCATGCAATTACAGGCTGGTGATACTGTCACTTTTAGTCGGAGAGATCCTGGAGGTCAATTAGTCATGGGATTTCGAAGAGCAACAAATTCCACTGATATACAGGTTGCCAAGATCTCTACACTTCCTAATGGCTCTCATTCGGGTGACACCTCATTCTCTGGGGTCTTTCAGAATTTGCCTTTAAGAGCTGAAGGAGATATTAGTTTGCATAAAATTGAAAATTTTGGAGGGAGGACAAATGATGCTTCGGGACAACAGCCAATATCAACCATGGACAAGAAAGGGGCTCGAAACATTGGGTCTAAAAACAAGAGGTTGCTCATGCATAGTGAAGATGCTTTGGAGTTAAGACTCACGTGGGAAGAAGCTCAAGATCTACTTCGGCCTCCACCAAGTGCAAATCCCACCATTGTGACTATCGACGACCATGAATTTGAAGAGTATGATGAACCTCCCGTTTTTGGCAAGAGGACTATATTCACTGCCCGACCAACTGGGGAACAGAAACAATGGGCTCAGTGTGATGATTGCTCAAAATGGCGGAGGTTGCCTGTGGATGTTCTTCTCCCTCCAAAGTGGACCTGTTCGGATAACATTTGGGATTTGAGCAGGTGTACATGTTCTGCACCAGAAGAGATCAGCACAAAGGAGCAAGAGAATCTTCTAAGAGCGAGTAAAGATTTTAAGAAACGTAAAATCATGAAGAGCCAGAAGTCTGCTCAAGAACTCGAGCCTTCTGGTTTGGATGCGCTGGCCAGTGCTGCTGTTTTGGGTGATAGTATGGCCGACTTGCAGGAACTAGGTACAACGACTAGGCATCCTAGACACCGGCGAGGATGCACTTGCATTGTGTGCATTCAGCCTCCAAGTGGGAAGGGAAAGCATAAATCCACATGCACATGCAATGTCTGCTTGACTGTAAAACGCCGTTTTAAAACGCTCATGCTGCGCAAGAAGAAACGCCAATCCGAACAGGAAGGAGAAACTCTGCTTAAGGATGAGAATCCACAATTTAACGAAACGGGAACGAGTGGAACGCTGAGGGTTACATCTCTGCAAACAAACCATACAGAGAACGAAGGAAGTCAGAGCAGGATAAAAGATGAGGCTGCAAATAGCAGCGGGCAAATTGACTTGAACTGTGACCCCAACCGTGAGGACATGCAACTGGAGGTAGCAGGTTTAAGCATGATGAGTCTGGTTGAAGCTGCCAGCCAACCTTTAGATACCCATTCAAAGCAAGTTGGCGTCTCCAACGTCGCGAGTGAGCCGCATACCAGTCAACCAAGTACCGTTGAGAGTGAAATACCCTTTTCTGAAGAAGGGTATCAAGGATCAGCACACGAGAGCACAAGTGATGGATGCAGAGAAAACCATTGA 2610 45.21 MASSRCLNTSCGAPTTPVNWIKGWPLGSAGFAHLCPNCGYAYENLVFCDKFHLEETGWRDCSFCGKRIHCGCIASKSMFECLDYGGIGCTSCMKRSRLDVLRRARDEISNGFDSVTVGNVDLLRPASVEDQAVQNGINKEKLLQLCNIMETNETDHLQQSQRVDRSASPAQNRENIRSPFREVGTSFFNMTKLPVKCQSSIGSIMYSKLDTSRPHLELKDMQESLSRPSLNISLGVPLGTPNFGVPFSGSAVEEDEKGILPFQQGQRSRPIFPKPLKTGITVNSETRKGMAPLVRIARPPAEGRGKNQLLPRYWPRITDQELEQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRRDPGGQLVMGFRRATNSTDIQVAKISTLPNGSHSGDTSFSGVFQNLPLRAEGDISLHKIENFGGRTNDASGQQPISTMDKKGARNIGSKNKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIVTIDDHEFEEYDEPPVFGKRTIFTARPTGEQKQWAQCDDCSKWRRLPVDVLLPPKWTCSDNIWDLSRCTCSAPEEISTKEQENLLRASKDFKKRKIMKSQKSAQELEPSGLDALASAAVLGDSMADLQELGTTTRHPRHRRGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRQSEQEGETLLKDENPQFNETGTSGTLRVTSLQTNHTENEGSQSRIKDEAANSSGQIDLNCDPNREDMQLEVAGLSMMSLVEAASQPLDTHSKQVGVSNVASEPHTSQPSTVESEIPFSEEGYQGSAHESTSDGCRENH 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1768366 1775477 - Sed0009051.1 Sed04g0238 708841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0238 869 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 1 837 - -
Sed04g0238 869 Gene3D - 315 442 IPR015300 -
Sed04g0238 869 Pfam B3 DNA binding domain 337 437 IPR003340 GO:0003677(InterPro)
Sed04g0238 869 Pfam CW-type Zinc Finger 580 623 IPR011124 GO:0008270(InterPro)
Sed04g0238 869 ProSiteProfiles Zinc finger CW-type profile. 575 625 IPR011124 GO:0008270(InterPro)
Sed04g0238 869 MobiDBLite consensus disorder prediction 728 743 - -
Sed04g0238 869 MobiDBLite consensus disorder prediction 824 869 - -
Sed04g0238 869 MobiDBLite consensus disorder prediction 488 502 - -
Sed04g0238 869 MobiDBLite consensus disorder prediction 728 793 - -
Sed04g0238 869 MobiDBLite consensus disorder prediction 824 847 - -
Sed04g0238 869 MobiDBLite consensus disorder prediction 486 506 - -
Sed04g0238 869 SMART B3_2 337 438 IPR003340 GO:0003677(InterPro)
Sed04g0238 869 Gene3D - 571 624 - -
Sed04g0238 869 ProSiteProfiles B3 DNA-binding domain profile. 337 438 IPR003340 GO:0003677(InterPro)
Sed04g0238 869 FunFam B3 domain-containing transcription repressor VAL1 315 442 - -
Sed04g0238 869 CDD B3_DNA 335 436 IPR003340 GO:0003677(InterPro)
Sed04g0238 869 SUPERFAMILY DNA-binding pseudobarrel domain 334 438 IPR015300 -
Sed04g0238 869 MobiDBLite consensus disorder prediction 744 790 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0238 Sed-Chr4:1768366 Sed04g1090 Sed-Chr4:18858087 9.70E-221 dispersed
Sed04g0238 Sed-Chr4:1768366 Sed14g1412 Sed-Chr14:22786347 1.70E-161 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38019 PF02362 B3 1.40E-16 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0238 K09287 - csv:101214226 1375.53