Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0239 ATGGATCTTCTCTTATTAGAGAAGGCTCTGCTAGGGGTTTTCATAGCTATGGTTGTTGCCATTACCATATCCAAGCTCAAAGGCAAACGTTTTAAACTCCCACCCGGTCCCATCCCGATACCCATATTCGGAAACTGGCTGCAGGTGGGCGATGACTTGAACCACAACAACCTGACAGAGTTAGCCAAAAAGTATGGTGACATATTATTGCTCAAAATGGGGCAGAGGAATTTAGTGGTTATTTCTTCACCAGAGTTAGCCAAGGAAGTGTTGCACACACAAGGAGTTGAATTTGGATCCAGGACCAGGAATGTTGTGTTTGATATATTCACAGACAAGGGGCAGGACATGGTGTTTACAGTTTATGGAGAGCACTGGAGGAAAATGAGAAGAATCATGACTGTGCCCTTTTTCACAAACAAGGTGGTGCAACAGAACAGGGTTGGTTGGGAGGAGGAAGCTGCTAGAGTTGTGGAGGATCTCAAGAACAATCCAGAAGCTTCCACGGTCGGGGTGGTTATTCGGAGGCGGCTGCAGCTTCTGATGTATAATAATATGTACAGGATCATGTTTGATAGGAGATTTGATAGCTTGGAGGATCCTCTTTACAATAAGCTTAAGGTTGTGAATGCTGAGAGGAGTCGGTTGTCTCAGAGCTTTGAATACAACTATGGCGATTTCATTCCTATACTCAAGCCTTTTCTTAGAGGGTATTTGAATGTGTGTAAGGATATCAAGGAGAGGAGGCTCAAGCTCTTCAAGGACCATTTCGTCGATGAGAGGAGGAGGCTCAAGAGCAACAAGGGGGATGGTGTAAAATGTGCCATTGATCATATTGTGGAGGCTCAAGAGCATGGTGAAATCACCGAAGACAATGTTCTGTTCATTGTTGAGAACATTAACGTTGCTGCGATTGAAACAACATTATGGTCATTGGAATGGGCTATTGCTGAGCTAGTGAACCGCCCCGACATCCAGAAAAAGCTGAGGAACGAGCTCGATTCAGTGCTCGGATATGGCGTCCAAATCACGGAGCCCGACATTCGCAATCTGCCTTACCTGCAGGCTGTTATCAAAGAAACCATGCGGCTAAGAATGGCCATTCCTCTCCTAGTGCCGCACATGAACCTCGAAGATGCGAAGTTAGCTGGTTATGACATCCCTGCAGAGAGCAAGATTCTGGTGAATGCTTGGTGGTTGGCCAACAACCCTGATCACTGGATCAAACCTCGTGAATTCCGACCCGAGAGGTTCTTGGAGGAGGAGGCTAATGTGGAGCCGAGCGGGAACGACTTCAGGTACCTTCCCTTTGGTGCCGGGAGGAGGAGCTGCCCTGGCATCGTGCTCGCCCTGCCCATCGTCGGTATTACTCTGGGTCGTCTCGTTCAGAATTTTGAGCTTCTGCCTCCTTCTGGGCAGTCCAAGATTGATACCACTGAAAAGCCTGGACAGTTCAGCCTGCAGATAATGAACCATTCCACTATTGTGGCAAAGCCAATATCTTTGTGA 1509 47.38 MDLLLLEKALLGVFIAMVVAITISKLKGKRFKLPPGPIPIPIFGNWLQVGDDLNHNNLTELAKKYGDILLLKMGQRNLVVISSPELAKEVLHTQGVEFGSRTRNVVFDIFTDKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQNRVGWEEEAARVVEDLKNNPEASTVGVVIRRRLQLLMYNNMYRIMFDRRFDSLEDPLYNKLKVVNAERSRLSQSFEYNYGDFIPILKPFLRGYLNVCKDIKERRLKLFKDHFVDERRRLKSNKGDGVKCAIDHIVEAQEHGEITEDNVLFIVENINVAAIETTLWSLEWAIAELVNRPDIQKKLRNELDSVLGYGVQITEPDIRNLPYLQAVIKETMRLRMAIPLLVPHMNLEDAKLAGYDIPAESKILVNAWWLANNPDHWIKPREFRPERFLEEEANVEPSGNDFRYLPFGAGRRSCPGIVLALPIVGITLGRLVQNFELLPPSGQSKIDTTEKPGQFSLQIMNHSTIVAKPISL 502
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 1778320 1780831 - Sed0027460.1 Sed04g0239 708842
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0239 502 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 501 - GO:0004497(PANTHER)|GO:0009808(PANTHER)|GO:0016710(PANTHER)
Sed04g0239 502 PRINTS P450 superfamily signature 356 367 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0239 502 PRINTS P450 superfamily signature 303 320 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0239 502 PRINTS P450 superfamily signature 435 444 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0239 502 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 437 446 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed04g0239 502 FunFam Trans-cinnamate 4-monooxygenase 23 494 - -
Sed04g0239 502 SUPERFAMILY Cytochrome P450 34 483 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0239 502 Pfam Cytochrome P450 34 491 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0239 502 CDD CYP73 63 493 - -
Sed04g0239 502 Gene3D Cytochrome P450 23 495 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0239 502 PRINTS E-class P450 group I signature 434 444 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0239 502 PRINTS E-class P450 group I signature 355 373 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0239 502 PRINTS E-class P450 group I signature 444 467 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0239 502 PRINTS E-class P450 group I signature 312 338 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0239 502 PRINTS E-class P450 group I signature 292 309 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0239 502 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0239 502 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0239 502 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0239 502 PRINTS E-class P450 group I signature 396 420 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0798 Sed-Chr1:5911669 Sed04g0239 Sed-Chr4:1778320 5.20E-243 dispersed
Sed04g0239 Sed-Chr4:1778320 Sed11g0602 Sed-Chr11:7066949 3.30E-181 dispersed
Sed04g0239 Sed-Chr4:1778320 Sed05g3340 Sed-Chr5:42700154 1.60E-244 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0239 K00487 - csv:101208511 885.174