Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed04g0239 | ATGGATCTTCTCTTATTAGAGAAGGCTCTGCTAGGGGTTTTCATAGCTATGGTTGTTGCCATTACCATATCCAAGCTCAAAGGCAAACGTTTTAAACTCCCACCCGGTCCCATCCCGATACCCATATTCGGAAACTGGCTGCAGGTGGGCGATGACTTGAACCACAACAACCTGACAGAGTTAGCCAAAAAGTATGGTGACATATTATTGCTCAAAATGGGGCAGAGGAATTTAGTGGTTATTTCTTCACCAGAGTTAGCCAAGGAAGTGTTGCACACACAAGGAGTTGAATTTGGATCCAGGACCAGGAATGTTGTGTTTGATATATTCACAGACAAGGGGCAGGACATGGTGTTTACAGTTTATGGAGAGCACTGGAGGAAAATGAGAAGAATCATGACTGTGCCCTTTTTCACAAACAAGGTGGTGCAACAGAACAGGGTTGGTTGGGAGGAGGAAGCTGCTAGAGTTGTGGAGGATCTCAAGAACAATCCAGAAGCTTCCACGGTCGGGGTGGTTATTCGGAGGCGGCTGCAGCTTCTGATGTATAATAATATGTACAGGATCATGTTTGATAGGAGATTTGATAGCTTGGAGGATCCTCTTTACAATAAGCTTAAGGTTGTGAATGCTGAGAGGAGTCGGTTGTCTCAGAGCTTTGAATACAACTATGGCGATTTCATTCCTATACTCAAGCCTTTTCTTAGAGGGTATTTGAATGTGTGTAAGGATATCAAGGAGAGGAGGCTCAAGCTCTTCAAGGACCATTTCGTCGATGAGAGGAGGAGGCTCAAGAGCAACAAGGGGGATGGTGTAAAATGTGCCATTGATCATATTGTGGAGGCTCAAGAGCATGGTGAAATCACCGAAGACAATGTTCTGTTCATTGTTGAGAACATTAACGTTGCTGCGATTGAAACAACATTATGGTCATTGGAATGGGCTATTGCTGAGCTAGTGAACCGCCCCGACATCCAGAAAAAGCTGAGGAACGAGCTCGATTCAGTGCTCGGATATGGCGTCCAAATCACGGAGCCCGACATTCGCAATCTGCCTTACCTGCAGGCTGTTATCAAAGAAACCATGCGGCTAAGAATGGCCATTCCTCTCCTAGTGCCGCACATGAACCTCGAAGATGCGAAGTTAGCTGGTTATGACATCCCTGCAGAGAGCAAGATTCTGGTGAATGCTTGGTGGTTGGCCAACAACCCTGATCACTGGATCAAACCTCGTGAATTCCGACCCGAGAGGTTCTTGGAGGAGGAGGCTAATGTGGAGCCGAGCGGGAACGACTTCAGGTACCTTCCCTTTGGTGCCGGGAGGAGGAGCTGCCCTGGCATCGTGCTCGCCCTGCCCATCGTCGGTATTACTCTGGGTCGTCTCGTTCAGAATTTTGAGCTTCTGCCTCCTTCTGGGCAGTCCAAGATTGATACCACTGAAAAGCCTGGACAGTTCAGCCTGCAGATAATGAACCATTCCACTATTGTGGCAAAGCCAATATCTTTGTGA | 1509 | 47.38 | MDLLLLEKALLGVFIAMVVAITISKLKGKRFKLPPGPIPIPIFGNWLQVGDDLNHNNLTELAKKYGDILLLKMGQRNLVVISSPELAKEVLHTQGVEFGSRTRNVVFDIFTDKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQNRVGWEEEAARVVEDLKNNPEASTVGVVIRRRLQLLMYNNMYRIMFDRRFDSLEDPLYNKLKVVNAERSRLSQSFEYNYGDFIPILKPFLRGYLNVCKDIKERRLKLFKDHFVDERRRLKSNKGDGVKCAIDHIVEAQEHGEITEDNVLFIVENINVAAIETTLWSLEWAIAELVNRPDIQKKLRNELDSVLGYGVQITEPDIRNLPYLQAVIKETMRLRMAIPLLVPHMNLEDAKLAGYDIPAESKILVNAWWLANNPDHWIKPREFRPERFLEEEANVEPSGNDFRYLPFGAGRRSCPGIVLALPIVGITLGRLVQNFELLPPSGQSKIDTTEKPGQFSLQIMNHSTIVAKPISL | 502 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1778320 | 1780831 | - | Sed0027460.1 | Sed04g0239 | 708842 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed04g0239 | 502 | PANTHER | TRANS-CINNAMATE 4-MONOOXYGENASE | 1 | 501 | - | GO:0004497(PANTHER)|GO:0009808(PANTHER)|GO:0016710(PANTHER) | |
| Sed04g0239 | 502 | PRINTS | P450 superfamily signature | 356 | 367 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0239 | 502 | PRINTS | P450 superfamily signature | 303 | 320 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0239 | 502 | PRINTS | P450 superfamily signature | 435 | 444 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0239 | 502 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 437 | 446 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed04g0239 | 502 | FunFam | Trans-cinnamate 4-monooxygenase | 23 | 494 | - | - | |
| Sed04g0239 | 502 | SUPERFAMILY | Cytochrome P450 | 34 | 483 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0239 | 502 | Pfam | Cytochrome P450 | 34 | 491 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0239 | 502 | CDD | CYP73 | 63 | 493 | - | - | |
| Sed04g0239 | 502 | Gene3D | Cytochrome P450 | 23 | 495 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0239 | 502 | PRINTS | E-class P450 group I signature | 434 | 444 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0239 | 502 | PRINTS | E-class P450 group I signature | 355 | 373 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0239 | 502 | PRINTS | E-class P450 group I signature | 444 | 467 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0239 | 502 | PRINTS | E-class P450 group I signature | 312 | 338 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0239 | 502 | PRINTS | E-class P450 group I signature | 292 | 309 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0239 | 502 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0239 | 502 | PRINTS | E-class P450 group I signature | 86 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0239 | 502 | PRINTS | E-class P450 group I signature | 181 | 199 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed04g0239 | 502 | PRINTS | E-class P450 group I signature | 396 | 420 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g0798 | Sed-Chr1:5911669 | Sed04g0239 | Sed-Chr4:1778320 | 5.20E-243 | dispersed | |
| Sed04g0239 | Sed-Chr4:1778320 | Sed11g0602 | Sed-Chr11:7066949 | 3.30E-181 | dispersed | |
| Sed04g0239 | Sed-Chr4:1778320 | Sed05g3340 | Sed-Chr5:42700154 | 1.60E-244 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed04g0239 | K00487 | - | csv:101208511 | 885.174 |