Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0241 ATGGCGGACGAAGTTCAGAATGATGTGATGGATCAGGTGGCAGATATTGCCCCCTTTGATCCAACTAAAAAGAAAAAGAAGAAGAAGGTTGTAATTCAGGATCTGGCTGAAGAGTCTGTTGACAAGTTAGCAGAGAAAACTGAAAGTTTGTCAGTTTCTGATAGTTTGGAACCTACCACATTTTCTGGACTTAAAAAGAAGAAGAAGAAACCAGTTGAGGTCAGCTCCTTGAATGATGATATCGCAGCAGATGCCACAGAGGATTTAGAAGATCAAGCCGAGGAAAAGGAGGAACCGGAGGGAATTGTTCTACATCGTTATCCTTGGGATGGAAGTGATCGTGACTATGATTATGAGGAGCTTCTTGGACGGGTATTCAACATTCTTAGAGAGAATAATCCAGAGCTTGCAGGTGATAGGCGTAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGCGAAGGCACAAAGAAAACTGTTTTTGTAAATTTCATGGACTTATGCAAAACGATGCATCGGCAGCCAGACCATGTTATGGCTTTCTTATTGGCCGAGCTGGGAACCAGTGGATCTCTTGATGGACAGCAGCGATTAGTTGTTAAAGGAAGGTTTGCTCCAAAGAACTTCGAAGGAATTCTGCGTCGATATGTCAATGAATATGTTATTTGCATTGGCTGCAAGAGTCCAGACACTATCCTTTCAAAGGAGAATCGACTCTTCTTTCTCAGATGTGAAAAGTGTGGTTCTGGACGATCAGTTGCTCCAATTAAAGCTGGTTTTGTTGCTCGCGTTGGCCGGAGGAACGCTGGGACGTGA 813 43.67 MADEVQNDVMDQVADIAPFDPTKKKKKKKVVIQDLAEESVDKLAEKTESLSVSDSLEPTTFSGLKKKKKKPVEVSSLNDDIAADATEDLEDQAEEKEEPEGIVLHRYPWDGSDRDYDYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGT 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1790509 1796974 - Sed0005612.1 Sed04g0241 708844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0241 270 MobiDBLite consensus disorder prediction 45 71 - -
Sed04g0241 270 MobiDBLite consensus disorder prediction 1 26 - -
Sed04g0241 270 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 115 222 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed04g0241 270 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 219 254 IPR016190 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed04g0241 270 FunFam Eukaryotic translation initiation factor 2 subunit 113 255 - -
Sed04g0241 270 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 24 257 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005850(PANTHER)|GO:0006413(InterPro)|GO:0031369(PANTHER)
Sed04g0241 270 Gene3D - 113 255 - -
Sed04g0241 270 SMART eIF2Bneu4 140 249 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Sed04g0241 270 Pfam Domain found in IF2B/IF5 139 248 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0026 Sed-Chr1:391269 Sed04g0241 Sed-Chr4:1790509 5.50E-130 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0241 K03238 - csv:101220978 469.544