Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0242 ATGTGTCGATCACAGCACTGGGCGGCTGCCCTTTTGATCTTCTGCTTCGTTTCCTCGTTCTTGCTACTTGTTGCTGCTGCTGAGCCGGTTATGGTTACCCACCCATCTGAAGTGGGCGCTTTGCTTGACATCAAGAGAAATTTAATCGATCCTAATGGGAATTTGAGCAACTGGAACAGAGGAGACCCTTGTACTTCAAACTGGACTGGTGTTGTGTGCTACAATGCCACAAATACCACATTCAATGATAACTTTCTACATGTTTCTGAATTGCAACTTCTAAATATGAGTTTATTTGGAAAGCTATCACCCGCTCTTGCTCGTTTATCTCATCTGAAAGTTTTGGACTTTATGTGGAACAATCTAAATGGGGGAATACCAGGAGAGATAGGCAATCTAACGTCCTTAGAACTATTGCTTCTGAATGGGAACCAGTTGTCAGGTTCATTGCCAGAAAGTCTTGGGAATCTTGTACATTTAGACAGAATACAGATTGACGAGAACCATATATCAGGACCAATACCTAAAACATTTGCAAACTTAAAAGCAGCTAAGCACTTCCACATGAACAACAACTCTATCGGCGGTGAAATCCCATCTGAGCTATCTGGATTGCCCAATCTTGTCCACTTCCTCGTTGACAATAACAACTTATCGGGGAGACTTCCACCAGGGTTTTTTCAATTGCCAAACTTAGAAATACTTCAACTCGACAACAACAACTTCAGCGGGTCAATTCCAGATTCTTATGGAAATATGAGTAAATTGCTGAAATTGAGTCTGAGGAACTGTAGCTTGGAAGGACCAATTCCTGATCTTAGCAGGATAAAGAACATGGGTTTTCTAGATCTAAGTTCCAATCGACTAACTGGATTCATACCACAAAACAAACTTTCTGATAATATCACAACCATCATTTTATCCAACAACCTACTTACTGGCACCATACCATCCAGTCTTTCGGGTCTACCATCACTTCAGAGATTGTCAATTGCAAATAATTCATTGAATGGATCTGTTCCATCCTCCATATGGCATAGCAGGAGGCTCGATTCGCTGGAAAGCCTTACAATAGAGCTGCAGAACAATAAATTTACAAATATTACTGGAAGCATCGCTCTTCCTCCGAATGTCACTGTCTGGCTTCATGGAAATCCTGCTTGTTCTGATAACAGCCTAGCGAAGGACTTCTGTGGATCTGAGAGAGAGGATATAATTGAGATTCCAACAATTAACAATGCTGGCTGTTCTCAGACATCATGCCCACCTTCTTATGAATGCGACCCAGCAAAATGTCCCTCGACTTGTATCTGTTCTGCGCCTCTTCTGGTTGGATATCGTTTGAAAAGTCCCGGGTTCTCACGTTTTAGTCCATATCAACATAGGTTTAAGGTGTACTTGACCAGTGGTCTTAAGTTACATCTTGAACAATTGGACATTGTTTCTGCTGTGTGGGAAAAAGGACCTCGATTAAGAATGATTCTGAAGGTTTTCCCTCTATTTGTTGCTAATAGCAATAATTCTCGCATGTTTAATGACAGCGAGGTTATACGAATTGTTTCCAAGTTTACAAATTGGAAAATTCAAGACAGCGATACATTTGGACCATATGAACTTCTCAGCTTGACAATATCAGACGTTTATAAGAATGTATTTTTTACACCATCATCTGATTCTACTATGAGTAAAGGGGCATTGGCTGGAATAATATTAGGGGCAATTGCTGGTGGAGCAACACTATCTGCAATTGTTTTTATTTTTGTTACAAGATCACGGATGAGGGCCCGCCACATGTCAAGAAGGCGACGCTTGTCAAAAGCCTCCATACAGATTGAGGGCGTAAAGGAGTTCAGTTACCGCGAAATGGCTCTAGCTACAAACAATTTTCACGATTCGACGGTAGTTGGTCAAGGTGGTTATGGAAAGGTTTACAGAGGAATTCTTGCAGATAGCACAGCTGTTGCTATCAAACGAGCACAGGATAACTCACTACAGGGTGAAAAAGAGTTCCTAACTGAAATACAATTACTGTCAAGGCTACACCACCGGAATCTTGTGGCTTTGATTGGATATTGTGATGAAGAAGGGGAACAGATGTTGATTTATGAGTTCATGTCAAATGGCACGCTGAGGGATCACCTTTCTGCGCATTCTGCGGAACCTTTGAGTTTTGCCACGAGATTAAAAGCTGCCCTAGGTGCAGCTAAGGGAGTTCTGTACCTGCACACAGAAGCCGATCCTCCGATATTCCACCGCGATATCAAGTCCAGCAACATATTATTAGACTTTAAATATGCGGCGAAGGTTGCCGATTTTGGACTTTCACGTCTTGCACCTCTACCAGATAAAGAAGGCGACACGCCTGATCATGTATCGACAGTAGTAAAAGGGACACCGGGTTATCTTGATCCAGAGTACTTCTTGACTCATAAATTGACAGATAAGAGCGATGTTTATAGTCTTGGTGTTGTGCTTTTGGAGCTTTTAACTGGCAAACACCCAATCGCACACGGCAAGAACATCGTTAGAGAGGCTAAGGGTTCATATCAGTCTGGAAAAATCTTCTCTATAATCGATGGTCGACTGGGATCTTATCCCGCCGAATGTGTCGAAAGGTTTGTGACTTTGGCTCTGAAGTGTTGCCAAGACGAAACAGATGCACGACCGTCAATGGCAGAAGTCGTTCGAACACTCGAGACCATCTTGCTCATGCTGCCTGAGTCGGATACGAAACATTCAGAGCCTGTGATCAGCGGTGTCGTAAAAGGGACGAGTCTCCAATCTTCATCATCCAACTCGAATAACTATTTCATGTCAGAAGTCTCTGGCAGTGACCTTGTAAGTGGAGTAGCTCCCACCATCACGCCCAGATAG 2874 42.73 MCRSQHWAAALLIFCFVSSFLLLVAAAEPVMVTHPSEVGALLDIKRNLIDPNGNLSNWNRGDPCTSNWTGVVCYNATNTTFNDNFLHVSELQLLNMSLFGKLSPALARLSHLKVLDFMWNNLNGGIPGEIGNLTSLELLLLNGNQLSGSLPESLGNLVHLDRIQIDENHISGPIPKTFANLKAAKHFHMNNNSIGGEIPSELSGLPNLVHFLVDNNNLSGRLPPGFFQLPNLEILQLDNNNFSGSIPDSYGNMSKLLKLSLRNCSLEGPIPDLSRIKNMGFLDLSSNRLTGFIPQNKLSDNITTIILSNNLLTGTIPSSLSGLPSLQRLSIANNSLNGSVPSSIWHSRRLDSLESLTIELQNNKFTNITGSIALPPNVTVWLHGNPACSDNSLAKDFCGSEREDIIEIPTINNAGCSQTSCPPSYECDPAKCPSTCICSAPLLVGYRLKSPGFSRFSPYQHRFKVYLTSGLKLHLEQLDIVSAVWEKGPRLRMILKVFPLFVANSNNSRMFNDSEVIRIVSKFTNWKIQDSDTFGPYELLSLTISDVYKNVFFTPSSDSTMSKGALAGIILGAIAGGATLSAIVFIFVTRSRMRARHMSRRRRLSKASIQIEGVKEFSYREMALATNNFHDSTVVGQGGYGKVYRGILADSTAVAIKRAQDNSLQGEKEFLTEIQLLSRLHHRNLVALIGYCDEEGEQMLIYEFMSNGTLRDHLSAHSAEPLSFATRLKAALGAAKGVLYLHTEADPPIFHRDIKSSNILLDFKYAAKVADFGLSRLAPLPDKEGDTPDHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVLLELLTGKHPIAHGKNIVREAKGSYQSGKIFSIIDGRLGSYPAECVERFVTLALKCCQDETDARPSMAEVVRTLETILLMLPESDTKHSEPVISGVVKGTSLQSSSSNSNNYFMSEVSGSDLVSGVAPTITPR 957
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1798476 1811352 - Sed0019642.1 Sed04g0242 708845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0242 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g0242 957 Gene3D Transferase(Phosphotransferase) domain 1 705 915 - -
Sed04g0242 957 FunFam Leucine-rich repeat protein kinase family protein 593 704 - -
Sed04g0242 957 PANTHER RECEPTOR-LIKE PROTEIN 55 55 899 - -
Sed04g0242 957 Gene3D Phosphorylase Kinase; domain 1 600 704 - -
Sed04g0242 957 SMART LRR_typ_2 133 157 IPR003591 -
Sed04g0242 957 SMART LRR_typ_2 323 347 IPR003591 -
Sed04g0242 957 SMART LRR_typ_2 229 252 IPR003591 -
Sed04g0242 957 SMART LRR_typ_2 205 228 IPR003591 -
Sed04g0242 957 Pfam Protein kinase domain 630 896 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0242 957 Gene3D Ribonuclease Inhibitor 32 301 IPR032675 -
Sed04g0242 957 SUPERFAMILY L domain-like 50 394 - -
Sed04g0242 957 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Sed04g0242 957 CDD STKc_IRAK 635 901 - -
Sed04g0242 957 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 705 914 - -
Sed04g0242 957 Gene3D Ribonuclease Inhibitor 302 395 IPR032675 -
Sed04g0242 957 SUPERFAMILY Protein kinase-like (PK-like) 614 927 IPR011009 -
Sed04g0242 957 ProSitePatterns Protein kinases ATP-binding region signature. 635 657 IPR017441 GO:0005524(InterPro)
Sed04g0242 957 Pfam Leucine Rich Repeat 135 157 IPR001611 GO:0005515(InterPro)
Sed04g0242 957 Pfam Leucine Rich Repeat 111 133 IPR001611 GO:0005515(InterPro)
Sed04g0242 957 Pfam Leucine Rich Repeat 231 253 IPR001611 GO:0005515(InterPro)
Sed04g0242 957 SMART serkin_6 629 903 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0242 957 ProSiteProfiles Protein kinase domain profile. 629 902 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0242 957 Pfam Leucine rich repeat 301 353 IPR001611 GO:0005515(InterPro)
Sed04g0242 957 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 35 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0242 Sed-Chr4:1798476 Sed14g0553 Sed-Chr14:5575599 4.90E-181 dispersed
Sed04g0242 Sed-Chr4:1798476 Sed02g0147 Sed-Chr2:31344702 4.10E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78955 PF07714 PK_Tyr_Ser-Thr 5.30E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0242 - - - 0.0