Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0271 ATGGAGACTCACTTCCATCACAATCTGTTCGACAGGCGATCCATTGCGAAGAACAAGAATCCGGCCGTCAAATGGATTAAGGAATGGGTCCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGCTCTCTTTTGAAATGGGTTACAGAGGATACATTGAAGGCGTTAAAGGAGAAGGTAAAACAGTCCGAGGCACTAGAACCCGAACCAGAACCCACCACTGAAGTGCTTTTCCTTTGTAGCTACGAGGGGTGTGGAAAAACGTTTATTGATGCAGGTGCTTTGAGGAAGCATTCCCACATTCATGGGGAGAGGCAATATGTTTGCCACTATGAGGGCTGTGGAAAGAAATTTTTGGATAGTTCGAAGTTGAAAAGACACTTTCTTATTCATACTGGTGAAAGAGATTTTGTCTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCCCTGGATTTCAACTTGAGATCGCATATGAAAACCCATTCTCAAGAAAACTATCATATCTGTCCTTACTCTGATTGTGGAAAGAGATTTGCCCATGAGTATAAATTGAAGAACCACATTTCATCTCACCATGAAAAGAATGGGACAGCTGAAGTGGTCAAGTACACACCACCTTCTGAGAAGCAAACAAAGGTTTCTAAACCTTCTGGAGGAGCTTATGCTTCTGCATCATCTGATCGCCCATACGCCTGCCCCTATGAAGGCTGCGAAAAAGCTTACATCCATGAATACAAACTCAAACTCCATTTGAGAAGAGAGCATCCTGGACATCTTGTAGAAGACAATGGCAATGCTCCACACAATGTGGAGAATGAGATGGAAGGCAGCGATCAAGACGGCTATGGCGGTGGAAAACGGGTGAACACGAAAAACCAGAAACGGAACAGGCCGAAGCCAAACACGAAGCTACCGCCTTCGAAAGTACCACGGCGAAAAGGCGCAACTCCGTCTCCTGCCCCGATGAGTGCTGTTAAAAAATCATGGCAGGTTAAGGAAGAAACGTACGAGGAAGAAGATAGCGAAGAAACGGAGGAGGACCGCGAGAATGTGGAGGAGGGTTGGAGATATGCTGAAAATGAAGAAGATGATGAAGAAACAGAGTATGAAGATTAA 1113 45.1 METHFHHNLFDRRSIAKNKNPAVKWIKEWVPQDVVATGGKCSLLKWVTEDTLKALKEKVKQSEALEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYSDCGKRFAHEYKLKNHISSHHEKNGTAEVVKYTPPSEKQTKVSKPSGGAYASASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNAPHNVENEMEGSDQDGYGGGKRVNTKNQKRNRPKPNTKLPPSKVPRRKGATPSPAPMSAVKKSWQVKEETYEEEDSEETEEDRENVEEGWRYAENEEDDEETEYED 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2034477 2038951 + Sed0026787.1 Sed04g0271 708874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0271 370 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Sed04g0271 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Sed04g0271 370 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Sed04g0271 370 Gene3D Classic Zinc Finger 77 102 - -
Sed04g0271 370 Gene3D Classic Zinc Finger 134 161 - -
Sed04g0271 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Sed04g0271 370 MobiDBLite consensus disorder prediction 202 227 - -
Sed04g0271 370 Gene3D Classic Zinc Finger 201 270 - -
Sed04g0271 370 FunFam Putative zinc finger protein 143 103 133 - -
Sed04g0271 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Sed04g0271 370 SMART c2h2final6 136 160 IPR013087 -
Sed04g0271 370 SMART c2h2final6 166 190 IPR013087 -
Sed04g0271 370 SMART c2h2final6 229 254 IPR013087 -
Sed04g0271 370 SMART c2h2final6 77 101 IPR013087 -
Sed04g0271 370 SMART c2h2final6 106 130 IPR013087 -
Sed04g0271 370 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 20 334 - GO:0000790(PANTHER)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005667(PANTHER)|GO:0006357(PANTHER)|GO:0031519(PANTHER)
Sed04g0271 370 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Sed04g0271 370 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Sed04g0271 370 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Sed04g0271 370 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Sed04g0271 370 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Sed04g0271 370 FunFam Zinc finger transcription factor YY1 204 271 - -
Sed04g0271 370 SUPERFAMILY beta-beta-alpha zinc fingers 160 193 IPR036236 -
Sed04g0271 370 MobiDBLite consensus disorder prediction 355 370 - -
Sed04g0271 370 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Sed04g0271 370 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Sed04g0271 370 Gene3D Classic Zinc Finger 162 191 - -
Sed04g0271 370 MobiDBLite consensus disorder prediction 256 370 - -
Sed04g0271 370 FunFam zinc finger transcription factor YY1 77 102 - -
Sed04g0271 370 FunFam Zinc finger protein 410 134 161 - -
Sed04g0271 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Sed04g0271 370 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Sed04g0271 370 MobiDBLite consensus disorder prediction 206 220 - -
Sed04g0271 370 Gene3D Classic Zinc Finger 103 133 - -
Sed04g0271 370 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Sed04g0271 370 MobiDBLite consensus disorder prediction 334 348 - -
Sed04g0271 370 FunFam zinc finger transcription factor YY1 163 194 - -
Sed04g0271 370 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0271 Sed-Chr4:2034477 Sed06g1769 Sed-Chr6:42416713 4.50E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38021 PF00096 zf-C2H2 0.0033 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0271 - - - 0.0