Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0287 ATGGCTACCTGCATTCGAGATTTGGTAGAAGACGAGGAACATATTTTCCGCAGCCAACTTCCTGAGGTCCAAGTGCCTGATGATATCACATTGCCCGATTTCGTACTCCAGAATGCTGAATCCTATGCTGGTAATGTGGCGTTCGTGGAAGCCGTGAGCGGTAAGGCGTATACTTACCGTGAAGTAGTGAGAGACACGAATAGATTCGCTAAGGCCTTGAACTCTCTGGGGTTGAGGAAGGGCCAGGTGGTTATTGTTGTTCTACCTAATGTTGCAGAATATGCCATTGTTGCTTTAGGTATTATGGCTACTGGAGGTGTGTTTTCTGGTGTGAATCCAGCTGCTCACATATCAGAAATCAAAAAGCAGGTGGAGGCAGCAGACGCCAAACTCGTTGTCACGAACAGCGCAAACTTCGAAAAGGTGAAGGAACTAAACCTACCGGTGATCGTGTTGGACGAGGAACTGATTGAAGGTTCCATGAACTGGTACAAACTGCTCGAAGCTGCGGATCGAGCAGGCAACAACTTTGTCAAAGAAGATATCAAGCAGACTGATTTATGTGCCCTTCCTTTCTCATCAGGCACCACAGGAGTTTCCAAAGGTGTAATGCTAACACACCGAAATCTAGTGGCTAACTTGTGTTCTACACTCTCCGGTGTGCCACAAGAAATCGAGGGCAAGGTCACGACTTTAGGCCTCATTCCGTTCTTCCACATTTACGGGATTACAGGCATATGTTGTGCCACACTTCGTAACAAGGGAAAAGTTGTTGTGATGGGAAGATTTGATCTCAGGACCTTCATCAATGCCCTGATAACACAGGAGGTCACATTTGCTCCAATTGTTCCTCCTATCATCTTGGCTTTGGTTAAGAATCCTATTGTGGAGGAATTCGATCTTAGCGGTCTCAAACTTCAAGCTATCATGACTGCAGCCGCTCCACTCGCTCCGGAACTTCAAACTGCCTTCGAGAAAAAGTTTCCCGGCGTTGATGTCCAAGAGGCATATGGACTAACCGAGCACAGTTGCATCACTCTCAACTATGGAAGTTTAGGCAAAGAGAATCTTGCTGCAAAGAAAAGCACAGTTGGACGCATTCTTCCTAATCTAGAAGTCAAATTCATCAACCCCGACAGCGGTCGGTCTCTGCCAAAGAATACTCCGGGCGAAATCTGTGTAAGAAGCCAGTGTGTGATGCAAGGCTACTACAAAAATGAAGAGGAGACTTCGAGGACAATTGACAACAAAGGCTGGATGCACACAGGAGACATCGGATACATAGATGATGATGGCGATGTGTTTATCGTGGATCGCATTAAAGAGTTGATTAAGTACAAAGGCTTTCAAGTTGCTCCAGCTGAGTTAGAAGCAATTCTCCTTACTCATTCCTCCGTTGAAGATGCAGCTGTCGTGCCGCTGCCAGATGAAGAAGCCGGGGAGATCCCAGCAGCAAGCGTCGTAATGGCTCGAAATGCAAACGAAACTGAAGATGAAATAATCAAATACGTCGCGTCAAACGTTGCACATTACAAGAAAGTCAGGCTCGTTCATTTTGTGGACACTATCCCGAAATCACCTTCGGGGAAAGTTATGAGGAGGTTGATCAAAGACAAGATGATCGAAAAGATTCGAGCCGAATCGGCCTCTTAA 1653 46.28 MATCIRDLVEDEEHIFRSQLPEVQVPDDITLPDFVLQNAESYAGNVAFVEAVSGKAYTYREVVRDTNRFAKALNSLGLRKGQVVIVVLPNVAEYAIVALGIMATGGVFSGVNPAAHISEIKKQVEAADAKLVVTNSANFEKVKELNLPVIVLDEELIEGSMNWYKLLEAADRAGNNFVKEDIKQTDLCALPFSSGTTGVSKGVMLTHRNLVANLCSTLSGVPQEIEGKVTTLGLIPFFHIYGITGICCATLRNKGKVVVMGRFDLRTFINALITQEVTFAPIVPPIILALVKNPIVEEFDLSGLKLQAIMTAAAPLAPELQTAFEKKFPGVDVQEAYGLTEHSCITLNYGSLGKENLAAKKSTVGRILPNLEVKFINPDSGRSLPKNTPGEICVRSQCVMQGYYKNEEETSRTIDNKGWMHTGDIGYIDDDGDVFIVDRIKELIKYKGFQVAPAELEAILLTHSSVEDAAVVPLPDEEAGEIPAASVVMARNANETEDEIIKYVASNVAHYKKVRLVHFVDTIPKSPSGKVMRRLIKDKMIEKIRAESAS 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2140265 2142786 + Sed0012565.1 Sed04g0287 708890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0287 550 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Sed04g0287 550 Pfam AMP-binding enzyme 37 404 IPR000873 -
Sed04g0287 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 441 - -
Sed04g0287 550 SUPERFAMILY Acetyl-CoA synthetase-like 17 543 - -
Sed04g0287 550 CDD 4CL 25 534 - -
Sed04g0287 550 Gene3D - 442 544 IPR045851 -
Sed04g0287 550 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Sed04g0287 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 536 - GO:0004467(PANTHER)|GO:0016405(PANTHER)|GO:0046949(PANTHER)
Sed04g0287 550 Gene3D - 13 441 IPR042099 -
Sed04g0287 550 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0287 Sed-Chr4:2140265 Sed07g0709 Sed-Chr7:5280572 9.10E-116 dispersed
Sed04g0287 Sed-Chr4:2140265 Sed06g1758 Sed-Chr6:42324381 1.70E-287 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0287 K01904 - csv:101220731 970.689