Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0306 ATGGTTTCCAGGTCGTATTCCAATTTACTCGAGCTCGCCACCGGAGATTCGCCGTCGTTCGGCCGGATTAACCGCCAAATCCCCCGGATTATGACAGTCGCCGGCTTAATCTCCGAAATCGACGACGACCCATCGGAGAGTGTCTCGTCGGAGCCGTCGTCTTCCTCCGCAGCCCACGACCGGATTATCATCGTCGCTAATGAGCTTCCCATCAGAGCTCACCGGAAGTCCGGCGCCGGTTGGACTTTCCGGTGGGATGAAAATTCCCTGCTCCTCCAGATGAAAGATGGGCTGGGAGATGATGATTTTGAAGTATTTTATGTGGGTTGTCTCAAGGAAGATATTCCCCTGAATGAACAAGATGAAGTTTCTCAAATTCTTTTAGAAACTTTCAAATGTGTACCAACATTTCTCACTCAAGATCTTTACTCTAGGTACTACCATGGCTTCTGTAAGCAACAATTATGGCCTCTGTTTCATTACATGTTGCCTCTTTCGCCCGACCTCGGCGGCCGGTTCAACCGGTCGCAGTGGCAGGCTTATGTTTCTGTGAATAAGATCTTTGCTGATAGGATCATGGAAGTGATCAACCCTGAGGATGATTTTGTTTGGATTCATGATTATCATCTCATGGTTTTGCCTACTTTTTTGAGGAAGAGGTTCAATAGGGTTAAGCTTGGATTCTTCTTGCACAGCCCTTTCCCCTCGTCGGAGATTTATCGAACGCTGCCGATTCGGGAGGAGCTCTTACGTGCCCTCCTGAATTCGGATTTGATAGGGTTTCATACTTTTGATTATGCTAGGCATTTTCTATCTTGTTGTAGTAGAATGCTGGGTTTAACTTATGAATCGAAACGGGGGTATATCGGGATCGAGTACTACGGCCGAACGATTAGTATTAAGATTTTACCTGTTGGCATTCATATGGGTCAGCTTCAATCTGTTTTGAGTCTCGAGAAGACTGAGGAGAAGGTTTGTGAGCTTATCAAGCAGTTTCGAGACCGGGATAGGATAATGCTGCTCGGTGTCGACGATATGGATATATTTAAGGGGATTAGTTTGAAGCTTTTGGCTATGGAACAGTTGTTGATCACACACCCTGAGTGGCAGGGTAAAGTTGTATTGGTGCAGATTGCTAATCCGGCTAGAGGCAGAGGGAAAGATGTGAAGGAAGTTCAGGATGAGACGAAGGCTACTGTTAAGCGGATTAATGATAGGTTCGGGAGACCTGGGTATGATCCTGTTGTGTTGATTGAGGAACCACTTAAATTCTATGAGAGAATTGCATATTATACTGTTGCCGAATGTTGTTTGGTCACTGCGGTTCGGGACGGTATGAATCTCATTCCATATGAGTACATTGTTAGTCGTCAAGGGAATGATAAGTTGGATAAACTATTGGGGTGGGAATCATCGGCTCCGAAGAAGAGTATGTTGGTTATATCTGAATTTATCGGTTGCTCTCCGTCATTAAGCGGAGCAATTCGAGTTAATCCCTGGAATATTGATGTTGTTGCTGATGCTATGGAATGTGCATTGGAGATGGAGGATGCTGAGAAGCAGCTCCGCCATGAGAAGCATTTTAGATATGTGAGCACACATGATGTCGGGTATTGGGCTCGGAGTTTCCTACTAGATTTGGAGAGGACTTGTCGGGATCATGTGAGGCATAGATGTTGGGGCATTGGGTTCGGTTTAAGTTTTAGAGTTGTTGCTCTTGATCCGAACTTCAGGAAGCTTGCAATGGAACACATAATTTCGACTTACAAGAGAACGAAATCACGGGCGATACTCTTGGACTATGATGGTACATTAATGCCTCAATGTTCAATCGATAAGAGTCCTACTTTGAAATGCATTGAAACTCTAAGTACCTTGTGTCGAGATAAGAGCAATATGGTATTCATTGTGAGTTCAAAAAGTCGAAAGACGCTTGCGGAATGGTTTGCCCCTTGTGAAAATCTCGGCATTGCTGCCGAGCATGGATACTTTATTAGGTTGAAGCAGGATGAGGAATGGGAAGCCAGTTTGCCAGTTGCAGATTGCTGTTGGAAGCAGATTGTGCAGCCAGTGATGAAACTCTATACCGAAACAACCGATGGATCAACAATTGAAGATCGAGAAACTGCCCTCGGATGGAGTTACGAAGATGCAGATCCAGATTTCGGTTCATGTCAAGCTAAGGAGCTCACCGATCATCTCGAAAGTGTTCTGGCCAACGAACCAGTTACTGTCAAAAGTGGTAGAAACTTTGTGGAAGTCAAACCGCAGGGTGTAAGCAAGGGTCTTGTGGCGAAACGACTTCTCTCGGCAATGCAAGAGAAGGGTATCCCCGCAGATTTTGTCCTCTGCATTGGCGACGACAGATCAGACGAAGACATGTTCAAGGTGATCTCGAGTTCCTTGGCAGGCCCATCGATTGTCCCCGGAGCCGAAATTTTTGCTTGTACGGTAGGGAGGAAACCAAGCAAAGCCAAGTATTACCTGGACGATCCATCCGAAATCGCGAGGCTGATGCACAGCTTGGCTTCGGTGTCGAGGCAGAACGTCCCGCCTTATCTGTCGCAAAGCTGA 2574 46.11 MVSRSYSNLLELATGDSPSFGRINRQIPRIMTVAGLISEIDDDPSESVSSEPSSSSAAHDRIIIVANELPIRAHRKSGAGWTFRWDENSLLLQMKDGLGDDDFEVFYVGCLKEDIPLNEQDEVSQILLETFKCVPTFLTQDLYSRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSQWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGIEYYGRTISIKILPVGIHMGQLQSVLSLEKTEEKVCELIKQFRDRDRIMLLGVDDMDIFKGISLKLLAMEQLLITHPEWQGKVVLVQIANPARGRGKDVKEVQDETKATVKRINDRFGRPGYDPVVLIEEPLKFYERIAYYTVAECCLVTAVRDGMNLIPYEYIVSRQGNDKLDKLLGWESSAPKKSMLVISEFIGCSPSLSGAIRVNPWNIDVVADAMECALEMEDAEKQLRHEKHFRYVSTHDVGYWARSFLLDLERTCRDHVRHRCWGIGFGLSFRVVALDPNFRKLAMEHIISTYKRTKSRAILLDYDGTLMPQCSIDKSPTLKCIETLSTLCRDKSNMVFIVSSKSRKTLAEWFAPCENLGIAAEHGYFIRLKQDEEWEASLPVADCCWKQIVQPVMKLYTETTDGSTIEDRETALGWSYEDADPDFGSCQAKELTDHLESVLANEPVTVKSGRNFVEVKPQGVSKGLVAKRLLSAMQEKGIPADFVLCIGDDRSDEDMFKVISSSLAGPSIVPGAEIFACTVGRKPSKAKYYLDDPSEIARLMHSLASVSRQNVPPYLSQS 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2297443 2301112 + Sed0024555.1 Sed04g0306 708909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0306 857 Gene3D Glycogen Phosphorylase B; 315 532 - -
Sed04g0306 857 Pfam Trehalose-phosphatase 598 833 IPR003337 GO:0005992(InterPro)
Sed04g0306 857 Gene3D Glycogen Phosphorylase B; 53 314 - -
Sed04g0306 857 NCBIfam HAD-IIB family hydrolase 597 798 IPR006379 -
Sed04g0306 857 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 594 711 - -
Sed04g0306 857 NCBIfam trehalose-phosphatase 593 843 IPR003337 GO:0005992(InterPro)
Sed04g0306 857 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 313 - -
Sed04g0306 857 SUPERFAMILY HAD-like 595 843 IPR036412 -
Sed04g0306 857 CDD GT20_TPS 61 548 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed04g0306 857 FunFam Trehalose-6-phosphate synthase 2 678 757 - -
Sed04g0306 857 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 845 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Sed04g0306 857 CDD HAD_TPP 596 834 - -
Sed04g0306 857 FunFam Trehalose-6-phosphate synthase 10 725 852 - -
Sed04g0306 857 Gene3D - 725 851 IPR023214 -
Sed04g0306 857 Gene3D - 594 706 IPR023214 -
Sed04g0306 857 FunFam Alpha,alpha-trehalose-phosphate synthase 315 532 - -
Sed04g0306 857 Pfam Glycosyltransferase family 20 61 548 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed04g0306 857 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 551 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0306 Sed-Chr4:2297443 Sed04g0856 Sed-Chr4:7408572 0.00E+00 dispersed
Sed04g0306 Sed-Chr4:2297443 Sed04g0307 Sed-Chr4:2297443 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0306 K16055 - cit:102609352 1462.2