Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0314 ATGGAACCCTCGGCTTCCAATTCTGATCCCAATCCCCCTAATAGCTCTTCCCGATTTGGGGTTTCCATCCCTTCCTTCAATTTCTTCCGTTCGCCTCTCTCCGTCATTTTGGATTACTCCGGAATTCTCCCCTCCAGGGCCGTTCCTCATGAATCTGAGCCTGTTATCAACGGCTCCGCCACTCCCGATTTGCGGGTTTTTTCCCCCAGTCGCCACCATTTGACGCCCTCTTCGTCTTCTTCCTCGTCTTCCTCTTCTAGCTCTGTTTCCTCCTCCGATTCCTCCCCTTCTGGGGAGGTTTCGATTCGGATTATTGGGTCTGCTGAGCAAGATCCTTCTCCGTCTGGGCTTTCTGTTTCTGGGGATTTGCCGGATTCCCCCGATGTCGAACGGGTTCCTCTGATCTCGCCCGGTTCCTCCTCGGTCGATTCTGGACCCGGTGGCGGCGTTGTTGATGGAGAATCGGGAAATGGCGTGGAAGAGAGTGTGAATAGAGATTCGTCTTATCAGAGATATGATATTCAGCAGGTTGCTAGATGGATTGAGCAGATTCTTCCCTTCTCTTTGCTGTTGCTCATTGTTTTTATTCGTCAGCATTTGGAAGGTTTTTTCATCACAATTTGGATATCAGCTGTCATGTATAAGTCGAACGATATTCTCAAGAAGCAGACGGCTCTGAAGGGGGAGAGGAAAGTTTATGTCCTTGCTGGTATTTCTATCACATTTTTGGTTCATGTAATTGGGATTTACTGGTGGTGTCATAGTGACGATCTTCTGTACCCGCTGGTCATGCTTCCTCCAAAGACAGTACCACCTTTTTGGCATGCCTTGTTCATCATTTTAGTTAACGATACGATGGCGAGGCAGGTTGCAATGGCTCTCAAATGTATTATTCTTATTTACTACAAGAATGGCAGAGGCCATAATTTTCGCCGGCAGGGTCAAATTTTAACTCTAGTGGAATACTCTCTTCTATTGTACCGCGCATTATTACCGACACCTGTATGGTACCGATTCTTCTTGAACAAAGATCAAGGAAGCCTTTTTTCATCACTGACAACAGGACTGTATTTAACTTTCAAGCTAACATCCGTTGTTGAGAAGATTCAATCGTTCGTTGCTGCTTTTAAGGCTCTATCACGAAAAGAAGTCCATTATGGATCATATGCCACATCAGAACAGGTAAATGCTGCGGGAGACCTCTGTGCTATTTGCCAGGAGAAGATGAATGCTCCAATCCTCTTACGTTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAGAGGACTTGCCCCCTATGCCGGGCACTGGTAAAGCCTGCCGAACTTCGAACATTTGGCGACGGGTCAACAAGCTTACTCTTCCAGTTGTTTTAG 1392 46.48 MEPSASNSDPNPPNSSSRFGVSIPSFNFFRSPLSVILDYSGILPSRAVPHESEPVINGSATPDLRVFSPSRHHLTPSSSSSSSSSSSSVSSSDSSPSGEVSIRIIGSAEQDPSPSGLSVSGDLPDSPDVERVPLISPGSSSVDSGPGGGVVDGESGNGVEESVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITIWISAVMYKSNDILKKQTALKGERKVYVLAGISITFLVHVIGIYWWCHSDDLLYPLVMLPPKTVPPFWHALFIILVNDTMARQVAMALKCIILIYYKNGRGHNFRRQGQILTLVEYSLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSRKEVHYGSYATSEQVNAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2381914 2388236 - Sed0016641.1 Sed04g0314 708917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0314 463 Pfam Ring finger domain 401 440 IPR001841 -
Sed04g0314 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 376 449 IPR013083 -
Sed04g0314 463 MobiDBLite consensus disorder prediction 49 165 - -
Sed04g0314 463 ProSiteProfiles Zinc finger RING-type profile. 402 440 IPR001841 -
Sed04g0314 463 MobiDBLite consensus disorder prediction 71 101 - -
Sed04g0314 463 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 2 463 IPR044235 GO:0061630(InterPro)|GO:0061630(PANTHER)|GO:1904294(InterPro)
Sed04g0314 463 SUPERFAMILY RING/U-box 395 445 - -
Sed04g0314 463 SMART ring_2 402 439 IPR001841 -
Sed04g0314 463 CDD RING-HC_RNFT1-like 400 440 - -
Sed04g0314 463 ProSitePatterns Zinc finger RING-type signature. 417 426 IPR017907 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0314 Sed-Chr4:2381914 Sed14g0547 Sed-Chr14:5503792 1.50E-151 dispersed
Sed04g0314 Sed-Chr4:2381914 Sed04g2974 Sed-Chr4:41131597 5.50E-37 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0314 - - - 0.0