Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0332 ATGGAAATCCCCAACCCCACTACCCAAATGCCTTCCTCTTCCAATTCCGCCGCCGCATTCCGCGGTTCTCACCACCGGCGAGCCCATTCCGAGGTCCATTTCCGGCTACCGGACGATATCGATCTCGTTTCCGACCCGTCTTCTGGATTTGGAGATCTGGGTTTTGATGACGATCTATTGAGTTCGTTTATGGATTTTGAGAAGATCGGATCCAAAATCGATGATGGGTCGTCGTCGAAATCTGAAGTGGCGGCCAGCGGCGGCGGTGCGGCGGCGGAGAATGCCGATGGGGAGAAAATTTCCCGGCCCAGGCACCGGCATAGCAGCTCTGCTGATGGGTCTTCTATTATGGAGTCTATTGAGGCTAAGAAGGCTATGGATCCTGATAAGCTTGCTGAGTTGTGGACTATTGATCCTAAACGTGCTAAGAGGATTTTGGCAAATAGACAGTCTGCTGCTCGGTCGAAAGAGAGAAAAGCTCGCTACATGATAGAACTTGAGAGAAAAGTTCAACGCCTTCAGACTGAAGCAACAACTCTGTCTGCACAGCTTACGTTGTACCAGAGAGATACCACAGGGCTTTCATCCGAAAACACAGAGCTCAAACTTCGCTTACAAGCTATGGAACAGCAAGCTAATTTACGTGACGCTCTTAATGACGCATTGAAAAAGGAAGTCGAGCGGCTCAAGTTCATGACTGGAGAAGTAATGACAGCTACAGATTCATATAACTTTGGATTGACTCAAGTTTCATATCCCCAATCTAGCTTTTCGCTCCAATCGCAACCCGGTCAATACAACCCACAGGGGATGCAAAGGCCTCAAGTTCATCCATTCCATTATAGTTTACCAAACCCGCATCAGGCCTCGTTTGTTCCATCCCACCAGCCACATGCCTCGACAGACATGTTTCAGCTGGATCCTATTAGCCAAATGCAGGGTCTCGATATCGGTAGCAGAGGCACAGAAATAAAGCCAGAAGGTTCCTCCATATCCATCAGTGAAAGTAGCAGCACATTTTAA 1023 48.58 MEIPNPTTQMPSSSNSAAAFRGSHHRRAHSEVHFRLPDDIDLVSDPSSGFGDLGFDDDLLSSFMDFEKIGSKIDDGSSSKSEVAASGGGAAAENADGEKISRPRHRHSSSADGSSIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYMIELERKVQRLQTEATTLSAQLTLYQRDTTGLSSENTELKLRLQAMEQQANLRDALNDALKKEVERLKFMTGEVMTATDSYNFGLTQVSYPQSSFSLQSQPGQYNPQGMQRPQVHPFHYSLPNPHQASFVPSHQPHASTDMFQLDPISQMQGLDIGSRGTEIKPEGSSISISESSSTF 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2482575 2486745 + Sed0024431.1 Sed04g0332 708935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0332 340 Gene3D - 139 191 - -
Sed04g0332 340 SMART brlzneu 136 200 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0332 340 FunFam probable transcription factor PosF21 139 192 - -
Sed04g0332 340 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 138 201 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0332 340 CDD bZIP_plant_RF2 141 190 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0332 340 Coils Coil 156 190 - -
Sed04g0332 340 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 9 294 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed04g0332 340 MobiDBLite consensus disorder prediction 1 41 - -
Sed04g0332 340 MobiDBLite consensus disorder prediction 71 115 - -
Sed04g0332 340 MobiDBLite consensus disorder prediction 1 20 - -
Sed04g0332 340 MobiDBLite consensus disorder prediction 325 340 - -
Sed04g0332 340 MobiDBLite consensus disorder prediction 97 111 - -
Sed04g0332 340 MobiDBLite consensus disorder prediction 316 340 - -
Sed04g0332 340 Pfam bZIP transcription factor 140 198 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0332 340 SUPERFAMILY Leucine zipper domain 140 191 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0236 Sed-Chr4:1758993 Sed04g0332 Sed-Chr4:2482575 9.00E-74 dispersed
Sed04g0332 Sed-Chr4:2482575 Sed05g3342 Sed-Chr5:42715804 6.70E-77 dispersed
Sed04g0332 Sed-Chr4:2482575 Sed04g0333 Sed-Chr4:2482575 2.50E-108 tandem
Sed04g0332 Sed-Chr4:2482575 Sed04g2954 Sed-Chr4:41036407 2.70E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38028 PF00170 bZIP_1 6.40E-08 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0332 - - - 0.0