Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0333 ATGGAAATCCCCAACCCCACTACCCAAATGCCTTCCTCTTCCAATTCCGCCGCCGCATTCCGCGGTTCTCACCACCGGCGAGCCCATTCCGAGGTCCATTTCCGGCTACCGGACGATATCGATCTCGTTTCCGACCCGTCTTCTGGATTTGGAGATCTGGGTTTTGATGACGATCTATTGAGTTCGTTTATGGATTTTGAGAAGATCGGATCCAAAATCGATGATGGGTCGTCGTCGAAATCTGAAGTGGCGGCCAGCGGCGGCGGTGCGGCGGCGGAGAATGCCGATGGGGAGAAAATTTCCCGGCCCAGGCACCGGCATAGCAGCTCTGCTGATGGGTCTTCTATTATGGAGTCTATTGAGGCTAAGAAGGCTATGGATCCTGATAAGCTTGCTGAGTTGTGGACTATTGATCCTAAACGTGCTAAGAGGATTTTGGCAAATAGACAGTCTGCTGCTCGGTCGAAAGAGAGAAAAGCTCGCTACATGATAGAACTTGAGAGAAAAGTTCAACGCCTTCAGACTGAAGCAACAACTCTGTCTGCACAGCTTACGTTGTACCAGAGAGATACCACAGGGCTTTCATCCGAAAACACAGAGCTCAAACTTCGCTTACAAGCTATGGAACAGCAAGCTAATTTACGTGACGGTATGCATCTCCTTTACCCTCTGCCTTATTATTGGTCCGATCCTCTTTGTTTAACTTTTAGATGTCCATGA 720 49.31 MEIPNPTTQMPSSSNSAAAFRGSHHRRAHSEVHFRLPDDIDLVSDPSSGFGDLGFDDDLLSSFMDFEKIGSKIDDGSSSKSEVAASGGGAAAENADGEKISRPRHRHSSSADGSSIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYMIELERKVQRLQTEATTLSAQLTLYQRDTTGLSSENTELKLRLQAMEQQANLRDGMHLLYPLPYYWSDPLCLTFRCP 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2482575 2486745 + Sed0024431.2 Sed04g0333 708936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0333 239 SMART brlzneu 136 200 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0333 239 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 9 218 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed04g0333 239 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 138 201 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0333 239 CDD bZIP_plant_RF2 141 190 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0333 239 Coils Coil 156 190 - -
Sed04g0333 239 MobiDBLite consensus disorder prediction 1 41 - -
Sed04g0333 239 SUPERFAMILY Leucine zipper domain 140 191 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0333 239 MobiDBLite consensus disorder prediction 71 115 - -
Sed04g0333 239 FunFam probable transcription factor PosF21 139 192 - -
Sed04g0333 239 Gene3D - 139 192 - -
Sed04g0333 239 MobiDBLite consensus disorder prediction 1 20 - -
Sed04g0333 239 Pfam bZIP transcription factor 140 198 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0333 239 MobiDBLite consensus disorder prediction 97 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0333 Sed-Chr4:2482575 Sed04g2954 Sed-Chr4:41036407 4.00E-84 dispersed
Sed04g0332 Sed-Chr4:2482575 Sed04g0333 Sed-Chr4:2482575 2.50E-108 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38029 PF00170 bZIP_1 6.70E-08 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0333 - - - 0.0