Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0333 | ATGGAAATCCCCAACCCCACTACCCAAATGCCTTCCTCTTCCAATTCCGCCGCCGCATTCCGCGGTTCTCACCACCGGCGAGCCCATTCCGAGGTCCATTTCCGGCTACCGGACGATATCGATCTCGTTTCCGACCCGTCTTCTGGATTTGGAGATCTGGGTTTTGATGACGATCTATTGAGTTCGTTTATGGATTTTGAGAAGATCGGATCCAAAATCGATGATGGGTCGTCGTCGAAATCTGAAGTGGCGGCCAGCGGCGGCGGTGCGGCGGCGGAGAATGCCGATGGGGAGAAAATTTCCCGGCCCAGGCACCGGCATAGCAGCTCTGCTGATGGGTCTTCTATTATGGAGTCTATTGAGGCTAAGAAGGCTATGGATCCTGATAAGCTTGCTGAGTTGTGGACTATTGATCCTAAACGTGCTAAGAGGATTTTGGCAAATAGACAGTCTGCTGCTCGGTCGAAAGAGAGAAAAGCTCGCTACATGATAGAACTTGAGAGAAAAGTTCAACGCCTTCAGACTGAAGCAACAACTCTGTCTGCACAGCTTACGTTGTACCAGAGAGATACCACAGGGCTTTCATCCGAAAACACAGAGCTCAAACTTCGCTTACAAGCTATGGAACAGCAAGCTAATTTACGTGACGGTATGCATCTCCTTTACCCTCTGCCTTATTATTGGTCCGATCCTCTTTGTTTAACTTTTAGATGTCCATGA | 720 | 49.31 | MEIPNPTTQMPSSSNSAAAFRGSHHRRAHSEVHFRLPDDIDLVSDPSSGFGDLGFDDDLLSSFMDFEKIGSKIDDGSSSKSEVAASGGGAAAENADGEKISRPRHRHSSSADGSSIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYMIELERKVQRLQTEATTLSAQLTLYQRDTTGLSSENTELKLRLQAMEQQANLRDGMHLLYPLPYYWSDPLCLTFRCP | 239 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2482575 | 2486745 | + | Sed0024431.2 | Sed04g0333 | 708936 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0333 | 239 | SMART | brlzneu | 136 | 200 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0333 | 239 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 9 | 218 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed04g0333 | 239 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 138 | 201 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0333 | 239 | CDD | bZIP_plant_RF2 | 141 | 190 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0333 | 239 | Coils | Coil | 156 | 190 | - | - | |
Sed04g0333 | 239 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Sed04g0333 | 239 | SUPERFAMILY | Leucine zipper domain | 140 | 191 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0333 | 239 | MobiDBLite | consensus disorder prediction | 71 | 115 | - | - | |
Sed04g0333 | 239 | FunFam | probable transcription factor PosF21 | 139 | 192 | - | - | |
Sed04g0333 | 239 | Gene3D | - | 139 | 192 | - | - | |
Sed04g0333 | 239 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Sed04g0333 | 239 | Pfam | bZIP transcription factor | 140 | 198 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0333 | 239 | MobiDBLite | consensus disorder prediction | 97 | 111 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0333 | Sed-Chr4:2482575 | Sed04g2954 | Sed-Chr4:41036407 | 4.00E-84 | dispersed | |
Sed04g0332 | Sed-Chr4:2482575 | Sed04g0333 | Sed-Chr4:2482575 | 2.50E-108 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38029 | PF00170 | bZIP_1 | 6.70E-08 | CL0018 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0333 | - | - | - | 0.0 |