Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0349 ATGGGAGCTTCAAGCCTCGCTGCTTCATTTTCATCGCTATTTGCAGTTCTTCCTCTTCAAAATAACTCCCACAACGAATCTCTGACACTTTGTACAAATCTCTCAAAACCCCATTTCAAATCCAACAAAATTATTTGGTGCGGAGTGTCGGAGAGTGGATTCCGGCGAAACCCCACAAGCGCTAAAGCTTCTACTTCCAAGAACAGGATGGAGGAGTACAATTTGGCTATGAAGAAGATGATGAGAAACCCCTATGAGTATCACCATGAACTGGGTATGAACTATACTGTGATAGCTGACAATTTGATTGTCGGTTCCCAGCCTCAAAAACCCGAAGATATCGATTTCTTGAAGGAGGAAGAAGGCGTTGCCTATATTCTGAATTTACAGCAGGACAAGGATGTTGAGTACTGGGGAATTGACTTACAATCAATTATAGAAAGATGTAAAGAACTTGGAATTCATCATATGAGGCAGCCGGCAAAAGATTTTGATCCAGATTCACTGAGAAATGGATTGCCCAAAGCTGTTTCTTTGATAGAATGGGCGATTTCAGAGGGTAAAGGAAAAGTTTATGTGCATTGCACTGCTGGACTAGGACGGGCCCCCGCCGTTGCAATAGCTTACCTCTACTGGTGTTGCGGAATGAATTTAAATACAGCATATGAAGCACTGACTTCAAAGAGACCATGCGGACCAAGTAAACGAGCGATCCGTGGAGCGACATACGATCTATCTAAAACAGATGCATGGAAGGAGCCATTCGAGAGCCTTCCAGATAATGCATTTGAAGATGTTGCAGATTGGGAAAGAAACTTGATTCAAAATCGGATCCGTTCTCTTCGTGTAACTTGA 855 42.92 MGASSLAASFSSLFAVLPLQNNSHNESLTLCTNLSKPHFKSNKIIWCGVSESGFRRNPTSAKASTSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDIDFLKEEEGVAYILNLQQDKDVEYWGIDLQSIIERCKELGIHHMRQPAKDFDPDSLRNGLPKAVSLIEWAISEGKGKVYVHCTAGLGRAPAVAIAYLYWCCGMNLNTAYEALTSKRPCGPSKRAIRGATYDLSKTDAWKEPFESLPDNAFEDVADWERNLIQNRIRSLRVT 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2570234 2573119 + Sed0004652.1 Sed04g0349 708952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0349 284 SMART dsp_5 94 248 IPR020422 GO:0006470(InterPro)
Sed04g0349 284 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 56 263 IPR052832 GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER)
Sed04g0349 284 Gene3D Protein tyrosine phosphatase superfamily 77 284 IPR029021 -
Sed04g0349 284 Pfam Dual specificity phosphatase, catalytic domain 117 231 IPR000340 GO:0016311(InterPro)
Sed04g0349 284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 234 IPR029021 -
Sed04g0349 284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 171 230 IPR000387 GO:0016311(InterPro)
Sed04g0349 284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 94 251 IPR020422 GO:0006470(InterPro)
Sed04g0349 284 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 77 284 - -
Sed04g0349 284 CDD DSP_laforin-like 93 240 IPR045204 GO:0019203(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0349 Sed-Chr4:2570234 Sed07g2222 Sed-Chr7:38100102 8.00E-39 dispersed
Sed04g0349 Sed-Chr4:2570234 Sed07g2221 Sed-Chr7:38100102 8.00E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0349 - - - 0.0