Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0349 | ATGGGAGCTTCAAGCCTCGCTGCTTCATTTTCATCGCTATTTGCAGTTCTTCCTCTTCAAAATAACTCCCACAACGAATCTCTGACACTTTGTACAAATCTCTCAAAACCCCATTTCAAATCCAACAAAATTATTTGGTGCGGAGTGTCGGAGAGTGGATTCCGGCGAAACCCCACAAGCGCTAAAGCTTCTACTTCCAAGAACAGGATGGAGGAGTACAATTTGGCTATGAAGAAGATGATGAGAAACCCCTATGAGTATCACCATGAACTGGGTATGAACTATACTGTGATAGCTGACAATTTGATTGTCGGTTCCCAGCCTCAAAAACCCGAAGATATCGATTTCTTGAAGGAGGAAGAAGGCGTTGCCTATATTCTGAATTTACAGCAGGACAAGGATGTTGAGTACTGGGGAATTGACTTACAATCAATTATAGAAAGATGTAAAGAACTTGGAATTCATCATATGAGGCAGCCGGCAAAAGATTTTGATCCAGATTCACTGAGAAATGGATTGCCCAAAGCTGTTTCTTTGATAGAATGGGCGATTTCAGAGGGTAAAGGAAAAGTTTATGTGCATTGCACTGCTGGACTAGGACGGGCCCCCGCCGTTGCAATAGCTTACCTCTACTGGTGTTGCGGAATGAATTTAAATACAGCATATGAAGCACTGACTTCAAAGAGACCATGCGGACCAAGTAAACGAGCGATCCGTGGAGCGACATACGATCTATCTAAAACAGATGCATGGAAGGAGCCATTCGAGAGCCTTCCAGATAATGCATTTGAAGATGTTGCAGATTGGGAAAGAAACTTGATTCAAAATCGGATCCGTTCTCTTCGTGTAACTTGA | 855 | 42.92 | MGASSLAASFSSLFAVLPLQNNSHNESLTLCTNLSKPHFKSNKIIWCGVSESGFRRNPTSAKASTSKNRMEEYNLAMKKMMRNPYEYHHELGMNYTVIADNLIVGSQPQKPEDIDFLKEEEGVAYILNLQQDKDVEYWGIDLQSIIERCKELGIHHMRQPAKDFDPDSLRNGLPKAVSLIEWAISEGKGKVYVHCTAGLGRAPAVAIAYLYWCCGMNLNTAYEALTSKRPCGPSKRAIRGATYDLSKTDAWKEPFESLPDNAFEDVADWERNLIQNRIRSLRVT | 284 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2570234 | 2573119 | + | Sed0004652.1 | Sed04g0349 | 708952 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0349 | 284 | SMART | dsp_5 | 94 | 248 | IPR020422 | GO:0006470(InterPro) | |
Sed04g0349 | 284 | PANTHER | DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN | 56 | 263 | IPR052832 | GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0019203(PANTHER)|GO:0046838(PANTHER)|GO:2001070(PANTHER) | |
Sed04g0349 | 284 | Gene3D | Protein tyrosine phosphatase superfamily | 77 | 284 | IPR029021 | - | |
Sed04g0349 | 284 | Pfam | Dual specificity phosphatase, catalytic domain | 117 | 231 | IPR000340 | GO:0016311(InterPro) | |
Sed04g0349 | 284 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 86 | 234 | IPR029021 | - | |
Sed04g0349 | 284 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 171 | 230 | IPR000387 | GO:0016311(InterPro) | |
Sed04g0349 | 284 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 94 | 251 | IPR020422 | GO:0006470(InterPro) | |
Sed04g0349 | 284 | FunFam | Phosphoglucan phosphatase LSF2, chloroplastic | 77 | 284 | - | - | |
Sed04g0349 | 284 | CDD | DSP_laforin-like | 93 | 240 | IPR045204 | GO:0019203(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0349 | Sed-Chr4:2570234 | Sed07g2222 | Sed-Chr7:38100102 | 8.00E-39 | dispersed | |
Sed04g0349 | Sed-Chr4:2570234 | Sed07g2221 | Sed-Chr7:38100102 | 8.00E-39 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0349 | - | - | - | 0.0 |