Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0362 ATGGATGAAATCCAAACCCCATTTGTTTTTAACTCTTTTTGGAAGTACCCATTTGCAGATTGGCTCTGTTTTTGGCCAAAGGAGGAGGAGAAGTGGAGGTGTTTGAGGAAATGCCAACATGGGTTTGTTTCTTCCTCTCTTCATTTTGGATTGGTTTTGTTCTTTTTTATGGTTTGTTTTGAGCCTGTTTTGAGTCAGGATTGGGATGGTGTGGTTGTGACCCAGGCTGATTTTCAATCCCTTCAGGCATTTAAGCAAGAACTTGATGATCCTAAAGGGTTTTTGAGGAGTTGGAATGATACTGGATTTGGGGCTTGTTCTGGTGGTTGGGTTGGGATTAAATGTGCTAAGGGACAGGTTATTGTGATTCAGCTTCCATGGAAGGGATTAGGAGGTAGAATCACTGAGAAGATAGGCCAACTTCAGGCTCTTAGGAAGCTTAGTTTACATGACAACTTGATTAGTGGATCAATCCCTTCTTCATTGGGGCTTCTTCCTAATCTTAGAGGGGTTCAGTTGTTTAATAATCGATTTTTGGGTTCGATCCCAGCTTCGTTGGGGCTTTGTCCTCTGCTTCAAACTCTTCACCTTGGTAACAATTTGCTCACTGGAACAATCCCTCCTAGTTTGGCTAACTCCACCAGGCTTTATTGGCTCAACTTGAGCTATAACTCATTTTCTGGTCCAATCCCGGCTAGTCTCGCTCGATCAGTGTCGCTTACTTTCCTTGCTCTTCAACACAACAATCTCTCAGGAAGCATTCCCAACTCTTGGGGTGGCGATCCCACGAATCGAAACCGGGTGTTTCGGCTTAAGTCTTTAACTCTTGATGACAATCTCCTCTCAGGTACAATACCAACTTCTTTAAGCAAGTTAAGTGAACTTCAAGTGGTTTCTCTTAGCCACAATAGGTTGAATGGTGGCATTCCTGAAGAAGTTAGTAGCCTTTCTCTGCTGAAAACTTTGGATGTTTCTAAAAATTTCCTTAATGGAAGTATGCCTCAAAGTCTTGATAGATTGAGAAACCTCTCTGTTCTCAACTTGAGTAGAAATAGATTCAATGGTCCAATTCCTGCTACTTTAGGGAACATTTCAACACTTACTCAACTTGATTTATCTCAGAACAATCTAAGTGGAGAAATACCAACTTCTCTTTCTGATTTGCAAGGTCTTCAATCCTTTAACGTCTCTTACAATGACCTTTCGGGTTCGGTTCCTCCAGCCCTCGCCGAAAAATTCAATGCAAGTTCCTTTGTTGGGAACATTCAGCTCTGTGGGTTCAGCAGTTCACCGCCATGCCTGTCTCCAGCCCCTTCTCAAGAAGCTCCTGCTCCTCTACCCAAAAGTTCGACATCACGACATCGAAAGCTGAGTACTAAAGATATAATCCTCATAGTTGCAGGAGCTCTCCTACTAATATTGGTTATAGTTTTCTTTGTCTTGTTGTGCTGCTTGATAAGGAAAAGGGCTGCTTCAAAAGGAAAGGATAGTGGTGAGGCTGCAGCTACAGCTGGGGCTGCACGGACCGATAAGGGTGTTCCACCGACGAGCAGTGAAGTTGAAGCGGGAGGGGATACTGGAGGAAAGCTCGTTCATTTCGACGGGCAAACGATCTTCACAGCAGATGATCTTTTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAGGCCACATTGGAGGATGGAAATCAAGTTGCAGTTAAGAGATTGAGAGAGAAGATCACTAAGAGCCAGAAAGAATTTGAAGCAGAAGTCAACATTCTTGGCAAGATCAGGCATCCAAACCTTCTAGCTTTAAGAGGTTATTACTTAGGACCTAAAGGAGAAAAGCTTCTCGTTTTCGATTACATGCTGAGCGGGAGTCTCGCAGCATTCCTGCATGCCCGTGGACCAGATACATCCATCGATTGGCCAACGAGAATGAAGATAGCTCAGGGAATGACCCGTGGCCTGTGTCACCTTCACGCACACGAGAACAGCATCCACGGAAACCTAACATCCAGCAACATTTTACTTGATGAGTACATAAATGCTAAGATTGCAGATTTTGGCCTGTCAAGGTTGATGACTACTGCTGCAAGCTCAAATGTGATAGCAACTGCAGGGGCACTCGGGTATCGAGCGCCAGAGCTCTCAAAGCTGAAGAAAGTGAACACGAAAACCGACATTTACAGCCTCGGAGTAATCATATTAGAACTCCTGACTGGGAAGTCCCCTGGTGAAGCCATGAACGGAGTCGATCTGCCGCAATGGGTAGCATCGATCGTCAAAGAGGAGTGGACTAATGAAGTTTTTGATTTGGAGCTGATGAGGGATGCATCTACCATTGGAGATGAGTTGCTGAACACTCTGAAACTCGCATTGCATTGTGTTGATCCTTCACCGTCAGCGAGGCCGGAAGTTCAACAAGTTCTGCAACAACTGGAGGAGATTAGGCCAGAAACTAATCCCAGTTCTGGGGATGATGGGGCTGGAGGGGGGGGACCCCCTTCAGCGAGTGAGTGA 2523 44.99 MDEIQTPFVFNSFWKYPFADWLCFWPKEEEKWRCLRKCQHGFVSSSLHFGLVLFFFMVCFEPVLSQDWDGVVVTQADFQSLQAFKQELDDPKGFLRSWNDTGFGACSGGWVGIKCAKGQVIVIQLPWKGLGGRITEKIGQLQALRKLSLHDNLISGSIPSSLGLLPNLRGVQLFNNRFLGSIPASLGLCPLLQTLHLGNNLLTGTIPPSLANSTRLYWLNLSYNSFSGPIPASLARSVSLTFLALQHNNLSGSIPNSWGGDPTNRNRVFRLKSLTLDDNLLSGTIPTSLSKLSELQVVSLSHNRLNGGIPEEVSSLSLLKTLDVSKNFLNGSMPQSLDRLRNLSVLNLSRNRFNGPIPATLGNISTLTQLDLSQNNLSGEIPTSLSDLQGLQSFNVSYNDLSGSVPPALAEKFNASSFVGNIQLCGFSSSPPCLSPAPSQEAPAPLPKSSTSRHRKLSTKDIILIVAGALLLILVIVFFVLLCCLIRKRAASKGKDSGEAAATAGAARTDKGVPPTSSEVEAGGDTGGKLVHFDGQTIFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKITKSQKEFEAEVNILGKIRHPNLLALRGYYLGPKGEKLLVFDYMLSGSLAAFLHARGPDTSIDWPTRMKIAQGMTRGLCHLHAHENSIHGNLTSSNILLDEYINAKIADFGLSRLMTTAASSNVIATAGALGYRAPELSKLKKVNTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETNPSSGDDGAGGGGPPSASE 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2632695 2635868 + Sed0010028.1 Sed04g0362 708965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0362 840 MobiDBLite consensus disorder prediction 497 527 - -
Sed04g0362 840 Gene3D Ribonuclease Inhibitor 76 190 IPR032675 -
Sed04g0362 840 Gene3D Ribonuclease Inhibitor 191 265 IPR032675 -
Sed04g0362 840 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 74 257 - -
Sed04g0362 840 Pfam Leucine Rich Repeat 144 163 IPR001611 GO:0005515(InterPro)
Sed04g0362 840 Pfam Leucine Rich Repeat 295 316 IPR001611 GO:0005515(InterPro)
Sed04g0362 840 Pfam Leucine Rich Repeat 270 292 IPR001611 GO:0005515(InterPro)
Sed04g0362 840 Pfam Protein tyrosine and serine/threonine kinase 549 814 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g0362 840 Gene3D Ribonuclease Inhibitor 266 435 IPR032675 -
Sed04g0362 840 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 258 436 - -
Sed04g0362 840 SUPERFAMILY L domain-like 114 429 - -
Sed04g0362 840 FunFam Pollen receptor-like kinase 1 623 827 - -
Sed04g0362 840 Pfam Leucine rich repeat 191 250 IPR001611 GO:0005515(InterPro)
Sed04g0362 840 Pfam Leucine rich repeat 341 401 IPR001611 GO:0005515(InterPro)
Sed04g0362 840 Gene3D Phosphorylase Kinase; domain 1 552 623 - -
Sed04g0362 840 MobiDBLite consensus disorder prediction 816 840 - -
Sed04g0362 840 CDD STKc_IRAK 552 817 - -
Sed04g0362 840 SUPERFAMILY Protein kinase-like (PK-like) 550 819 IPR011009 -
Sed04g0362 840 Gene3D Transferase(Phosphotransferase) domain 1 624 828 - -
Sed04g0362 840 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 61 828 IPR052451 -
Sed04g0362 840 ProSiteProfiles Protein kinase domain profile. 546 817 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0362 840 Pfam Leucine rich repeat N-terminal domain 76 115 IPR013210 -
Sed04g0362 840 FunFam Leucine-rich repeat receptor-like protein kinase 532 622 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0186 Sed-Chr2:33432404 Sed04g0362 Sed-Chr4:2632695 8.60E-158 dispersed
Sed04g0362 Sed-Chr4:2632695 Sed04g1121 Sed-Chr4:21586953 4.20E-152 dispersed
Sed14g1087 Sed-Chr14:20385004 Sed04g0362 Sed-Chr4:2632695 8.70E-22 dispersed
Sed04g0362 Sed-Chr4:2632695 Sed04g2935 Sed-Chr4:40926212 1.10E-242 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78959 PF07714 PK_Tyr_Ser-Thr 8.50E-41 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0362 - - - 0.0