Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0380 ATGGGCATTAAGGGTTTAACCAAGCTTTTAGCCGATAATGCCCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTCGGCCGCAAAATCGCAATCGACGCCAGCATGAGTATTTATCAATTTCTTATTGTTGTTGGAAGAAGTGGGACTGAGATGCTGACCAATGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAGCCGGACAATAAGGCTTCTGGAAGCTGGAATTAAGCCTGTATATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAGCAAGAACTCGCAAAACGTTATTCAAAGAGAGCAGATGCTACTGAAGATCTGGCAGATGCAATTGAGGTTGGCAACAAGGAGGATATTGAGAAATTCAGTAAAAGGACGGTGAAGGTTACAAAACAGCACAATGATGACTGTAAAAGACTCTTGAGACTCATGGGAGTGCCTGTGATCGAGGCTCCCTCTGAAGCCGAGTCACAATGTGCTGCGCTTTGCAAGTTAGGAAAGGTTTATGCTGTAGCATCTGAAGATATGGATTCACTAACATTTGGATCTCCCAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTCATGGAATTTGAAGTTGCGAAGATTTTGGAGGAGCTGAACCTTACCATGGATCAATTTGTTGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAGTATCCGAGGTATAGGGGGGCAGACTGCTCTAAAGCTTATCCGTCAACATGGGCAGATAGAAAATATACTAGAGAACATAAATAAAGAAAGGTACCAAATTCCAGAGGATTGGCCTTATCAAGAGGCCCGACAACTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTCGACATAAAGTGGACTACTCCAGATGAAGAAGGCTTAATATCATTTTTGGTGAATGAGAATGGGTTCAACAGCGATAGAGTGACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCAGATTGGAGTCATTTTTCAAGCCTGTAAGCAATCCTTCAGCATCCGTTAAGAGAAAGGAGACGTCAGAAAAGCCAACCAAACAAGCAGCAACCAAGAAATCAAAGTCGGGTGGTGGTAAACGAAAGTAG 1149 42.65 MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAESQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIRGIGGQTALKLIRQHGQIENILENINKERYQIPEDWPYQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRLESFFKPVSNPSASVKRKETSEKPTKQAATKKSKSGGGKRK 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2733774 2740493 - Sed0020210.1 Sed04g0380 708983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0380 382 CDD H3TH_FEN1-Euk 222 289 - -
Sed04g0380 382 MobiDBLite consensus disorder prediction 337 356 - -
Sed04g0380 382 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Sed04g0380 382 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788(InterPro)
Sed04g0380 382 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 373 IPR006084 GO:0008409(PANTHER)|GO:0017108(PANTHER)
Sed04g0380 382 SMART xpgn3 1 108 IPR006085 GO:0004518(InterPro)
Sed04g0380 382 FunFam Flap endonuclease 1 219 286 - -
Sed04g0380 382 Gene3D - 223 286 - -
Sed04g0380 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Sed04g0380 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Sed04g0380 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Sed04g0380 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Sed04g0380 382 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Sed04g0380 382 SMART xpgineu 147 219 IPR006086 GO:0004518(InterPro)
Sed04g0380 382 MobiDBLite consensus disorder prediction 336 382 - -
Sed04g0380 382 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 353 IPR036279 -
Sed04g0380 382 SMART 53exo3 29 299 IPR002421 GO:0003677(InterPro)|GO:0008409(InterPro)
Sed04g0380 382 CDD PIN_FEN1 4 332 - -
Sed04g0380 382 Gene3D - 10 222 - -
Sed04g0380 382 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788(InterPro)
Sed04g0380 382 SMART HhH_4 221 254 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Sed04g0380 382 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788(InterPro)
Sed04g0380 382 FunFam Flap endonuclease 1 10 222 - -
Sed04g0380 382 Pfam XPG I-region 150 234 IPR006086 GO:0004518(InterPro)
Sed04g0380 382 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0380 K04799 - - csv:101204273 697.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0380 Sed-Chr4:2733774 Sed04g0382 Sed-Chr4:2733774 1.50E-202 dispersed
Sed04g0380 Sed-Chr4:2733774 Sed04g0381 Sed-Chr4:2733774 1.50E-202 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed06g1845 . 59 797 Core DNA Replication Machinery Family AT4G14700 64.7 5.4e-274 941.4
Sed06g1845 . 70 797 Core DNA Replication Machinery Family AT4G12620 68.0 1.1e-282 970.3
Sed10g1284 . 2 361 Core DNA Replication Machinery Family AT2G37560 66.9 5.5e-143 505.0
Sed04g0364 . 12 418 Core DNA Replication Machinery Family AT2G01120 65.9 3.8e-154 542.3
Sed09g0048 . 3 535 Core DNA Replication Machinery Family AT4G29910 59.3 1.6e-176 617.1
Sed02g0083 . 59 334 Core DNA Replication Machinery Family AT1G26840 60.8 7.4e-85 311.6
Sed06g1123 . 1 241 Core DNA Replication Machinery Family AT1G26840 63.5 4.2e-80 295.8
Sed06g1124 . 1 241 Core DNA Replication Machinery Family AT1G26840 63.5 4.2e-80 295.8
Sed06g1125 . 1 241 Core DNA Replication Machinery Family AT1G26840 63.5 4.2e-80 295.8
Sed06g1126 . 1 241 Core DNA Replication Machinery Family AT1G26840 63.5 4.2e-80 295.8
Sed04g3507 . 1 801 Core DNA Replication Machinery Family AT1G79150 60.5 1.0e-243 840.9
Sed02g0928 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.0 0.0e+00 1342.0
Sed02g0929 . 8 857 Core DNA Replication Machinery Family AT1G44900 76.5 0.0e+00 1243.4
Sed10g0145 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.5 4.1e-268 921.4
Sed10g0146 . 1 457 Core DNA Replication Machinery Family AT5G46280 84.4 2.9e-221 765.8
Sed04g3910 . 1 845 Core DNA Replication Machinery Family AT2G16440 74.7 0.0e+00 1175.6
Sed11g0172 . 1 735 Core DNA Replication Machinery Family AT2G07690 77.1 0.0e+00 1103.2
Sed14g1703 . 59 878 Core DNA Replication Machinery Family AT5G44635 71.3 0.0e+00 1176.8
Sed07g0570 . 11 722 Core DNA Replication Machinery Family AT4G02060 84.6 0.0e+00 1208.0
Sed05g3752 . 52 468 Core DNA Replication Machinery Family AT2G29680 64.0 2.3e-153 540.0
Sed05g3753 . 52 468 Core DNA Replication Machinery Family AT2G29680 64.0 2.3e-153 540.0
Sed05g3754 . 52 468 Core DNA Replication Machinery Family AT2G29680 64.0 2.3e-153 540.0
Sed05g3752 . 27 429 Core DNA Replication Machinery Family AT1G07270 60.7 1.1e-138 491.1
Sed05g3753 . 27 429 Core DNA Replication Machinery Family AT1G07270 60.7 1.1e-138 491.1
Sed05g3754 . 27 429 Core DNA Replication Machinery Family AT1G07270 60.7 1.1e-138 491.1
Sed07g0238 . 1 593 Core DNA Replication Machinery Family AT3G25100 77.9 1.4e-258 889.8
Sed02g0741 . 24 790 Core DNA Replication Machinery Family AT3G09660 74.4 0.0e+00 1111.7
Sed06g0762 . 13 642 Core DNA Replication Machinery Family AT2G14050 78.4 1.5e-287 986.1
Sed06g0763 . 13 641 Core DNA Replication Machinery Family AT2G14050 78.2 1.4e-285 979.5
Sed06g0764 . 13 591 Core DNA Replication Machinery Family AT2G14050 77.5 2.1e-260 896.0
Sed05g3488 . 1 411 Core DNA Replication Machinery Family AT2G20980 54.7 6.8e-113 405.2
Sed05g2402 . 7 971 Core DNA Replication Machinery Family AT1G77320 50.1 2.7e-259 892.9
Sed09g1501 . 1 198 Core DNA Replication Machinery Family AT1G80190 65.8 1.3e-75 280.4
Sed09g1502 . 1 198 Core DNA Replication Machinery Family AT1G80190 65.8 1.3e-75 280.4
Sed09g1503 . 26 223 Core DNA Replication Machinery Family AT1G80190 65.8 1.3e-75 280.4
Sed13g1071 . 1 145 Core DNA Replication Machinery Family AT3G12530 72.4 1.8e-61 233.0
Sed03g0379 . 1 184 Core DNA Replication Machinery Family AT1G19080 67.4 4.8e-69 258.5
Sed03g0380 . 1 184 Core DNA Replication Machinery Family AT1G19080 67.4 4.8e-69 258.5
Sed03g0381 . 1 184 Core DNA Replication Machinery Family AT1G19080 67.4 4.8e-69 258.5
Sed03g0379 . 1 184 Core DNA Replication Machinery Family AT3G55490 67.4 4.8e-69 258.5
Sed03g0380 . 1 184 Core DNA Replication Machinery Family AT3G55490 67.4 4.8e-69 258.5
Sed03g0381 . 1 184 Core DNA Replication Machinery Family AT3G55490 67.4 4.8e-69 258.5
Sed02g1664 . 1 164 Core DNA Replication Machinery Family AT5G49010 61.0 4.9e-48 188.7
Sed01g0438 . 11 1537 Core DNA Replication Machinery Family AT5G67100 60.5 0.0e+00 1758.8
Sed06g1729 . 2 624 Core DNA Replication Machinery Family AT1G67630 63.1 3.3e-223 772.3
Sed09g0379 . 1 443 Core DNA Replication Machinery Family AT1G67320 65.2 5.4e-184 641.7
Sed10g1644 . 1 450 Core DNA Replication Machinery Family AT5G41880 64.6 5.5e-175 611.7
Sed10g1645 . 1 450 Core DNA Replication Machinery Family AT5G41880 64.6 5.5e-175 611.7
Sed03g2353 . 1 1081 Core DNA Replication Machinery Family AT5G63960 79.9 0.0e+00 1779.2
Sed12g1248 . 1 436 Core DNA Replication Machinery Family AT2G42120 75.0 6.3e-200 694.5
Sed12g1249 . 1 436 Core DNA Replication Machinery Family AT2G42120 75.0 6.3e-200 694.5
Sed02g0362 . 1 438 Core DNA Replication Machinery Family AT2G42120 72.1 8.5e-197 684.1
Sed12g1250 . 1 352 Core DNA Replication Machinery Family AT2G42120 77.0 7.7e-166 581.3
Sed12g1251 . 1 352 Core DNA Replication Machinery Family AT2G42120 77.0 7.7e-166 581.3
Sed12g1252 . 1 364 Core DNA Replication Machinery Family AT2G42120 74.2 7.5e-161 564.7
Sed02g0363 . 1 368 Core DNA Replication Machinery Family AT2G42120 71.5 2.0e-158 556.6
Sed02g0364 . 1 323 Core DNA Replication Machinery Family AT2G42120 69.3 1.2e-134 477.6
Sed09g0379 . 1 443 Core DNA Replication Machinery Family AT1G67320 65.2 5.4e-184 641.7
Sed05g1212 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.1 0.0e+00 2965.3
Sed05g1215 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.1 0.0e+00 2965.3
Sed05g1213 . 1 2113 Core DNA Replication Machinery Family AT1G08260 70.5 0.0e+00 2954.1
Sed05g1214 . 1 2113 Core DNA Replication Machinery Family AT1G08260 70.5 0.0e+00 2954.1
Sed05g1212 . 24 2201 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2915.2
Sed05g1215 . 24 2201 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2915.2
Sed05g1213 . 24 2219 Core DNA Replication Machinery Family AT2G27120 66.9 0.0e+00 2904.0
Sed05g1214 . 24 2219 Core DNA Replication Machinery Family AT2G27120 66.9 0.0e+00 2904.0
Sed08g2017 . 45 524 Core DNA Replication Machinery Family AT5G22110 69.6 4.4e-194 675.2
Sed01g3225 . 1 925 Core DNA Replication Machinery Family AT5G22010 63.0 3.3e-304 1042.0
Sed03g1302 . 1 333 Core DNA Replication Machinery Family AT1G63160 90.4 8.4e-173 604.0
Sed03g1303 . 1 333 Core DNA Replication Machinery Family AT1G63160 90.4 8.4e-173 604.0
Sed14g0728 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 2.4e-178 622.5
Sed06g0991 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.5 8.2e-152 534.3
Sed03g0419 . 1 360 Core DNA Replication Machinery Family AT1G77470 75.8 2.6e-154 542.7
Sed03g0420 . 1 283 Core DNA Replication Machinery Family AT1G77470 75.3 8.6e-118 421.4
Sed03g1813 . 26 618 Core DNA Replication Machinery Family AT2G06510 66.6 2.8e-246 849.0
Sed04g0901 . 31 693 Core DNA Replication Machinery Family AT2G06510 51.0 5.0e-195 678.7
Sed08g0277 . 1 622 Core DNA Replication Machinery Family AT5G08020 68.2 1.1e-247 853.6
Sed12g2011 . 1 622 Core DNA Replication Machinery Family AT5G08020 68.1 3.3e-244 842.0
Sed04g0901 . 7 801 Core DNA Replication Machinery Family AT5G45400 51.3 7.1e-224 775.0
Sed08g0277 . 1 617 Core DNA Replication Machinery Family AT5G61000 67.5 1.3e-243 840.1
Sed12g2011 . 1 617 Core DNA Replication Machinery Family AT5G61000 66.2 1.4e-237 820.1
Sed04g0901 . 27 813 Core DNA Replication Machinery Family AT4G19130 54.2 1.1e-223 774.2
Sed04g0381 . 1 377 Core DNA Replication Machinery Family AT5G26680 86.7 3.1e-188 655.6
Sed04g0382 . 1 377 Core DNA Replication Machinery Family AT5G26680 86.7 3.1e-188 655.6
Sed04g0380 . 1 361 Core DNA Replication Machinery Family AT5G26680 88.4 1.3e-183 640.2
Sed12g0307 . 12 1111 Core DNA Replication Machinery Family AT1G08840 51.9 9.1e-290 994.2
Sed05g2802 . 40 753 Core DNA Replication Machinery Family AT1G08130 70.9 4.3e-292 1001.5
Sed05g2803 . 40 672 Core DNA Replication Machinery Family AT1G08130 69.6 1.3e-251 867.1
Sed05g2802 . 163 752 Core DNA Replication Machinery Family AT1G49250 69.0 1.1e-237 820.5
Sed05g2803 . 163 672 Core DNA Replication Machinery Family AT1G49250 68.7 1.7e-201 700.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006601 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 2 1 1 1 1 1 2 2 1 1 3 2 1 37