Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0381 ATGGGCATTAAGGGTTTAACCAAGCTTTTAGCCGATAATGCCCCCAAAGGCATGAAGGAGCAGAAGTTCGAAAGCTATTTCGGCCGCAAAATCGCAATCGACGCCAGCATGAGTATTTATCAATTTCTTATTGTTGTTGGAAGAAGTGGGACTGAGATGCTGACCAATGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAGCCGGACAATAAGGCTTCTGGAAGCTGGAATTAAGCCTGTATATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAGCAAGAACTCGCAAAACGTTATTCAAAGAGAGCAGATGCTACTGAAGATCTGGCAGATGCAATTGAGGTTGGCAACAAGGAGGATATTGAGAAATTCAGTAAAAGGACGGTGAAGGTTACAAAACAGCACAATGATGACTGTAAAAGACTCTTGAGACTCATGGGAGTGCCTGTGATCGAGGCTCCCTCTGAAGCCGAGTCACAATGTGCTGCGCTTTGCAAGTTAGGAAAGGTTTATGCTGTAGCATCTGAAGATATGGATTCACTAACATTTGGATCTCCCAGATTTCTTCGTCATTTAATGGATCCCAGCTCAAGGAAGATCCCAGTCATGGAATTTGAAGTTGCGAAGATTTTGGAGGAGCTGAACCTTACCATGGATCAATTTGTTGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAGTATCCGAGGTATAGGGGGGCAGACTGCTCTAAAGCTTATCCGTCAACATGGGCAGATAGAAAATATACTAGAGAACATAAATAAAGAAAGGTACCAAATTCCAGAGGATTGGCCTTATCAAGAGGCCCGACAACTTTTTAAAGAACCACTAGTGTGTACTGACGAAGAGCAACTCGACATAAAGTGGACTACTCCAGATGAAGAAGGCTTAATATCATTTTTGGTGAATGAGAATGGGTTCAACAGCGATAGAGTGACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCAGATTGGAGTCATTTTTCAAGCCTGTAAGCAATCCTTCAGCATCCGTTAAGAGAAAGGTAAACAAATGTGTTCTTAGGTCTCCAAAACCAGGAATCCAGCATAAGTACTCTCCACAAGCTTTTTATTCGCCAAGGACAAAGGTCACTGGCAGCCTAGGCAAGCCAATGTTAGACCATTCTTCCAAGTTCTCGGGGCCGGGGCCATTAGTTATGGCTGTTTGCTTCTGCACATGA 1254 43.06 MGIKGLTKLLADNAPKGMKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAESQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFVDLCILSGCDYCDSIRGIGGQTALKLIRQHGQIENILENINKERYQIPEDWPYQEARQLFKEPLVCTDEEQLDIKWTTPDEEGLISFLVNENGFNSDRVTKAVEKIKAAKNKSSQGRLESFFKPVSNPSASVKRKVNKCVLRSPKPGIQHKYSPQAFYSPRTKVTGSLGKPMLDHSSKFSGPGPLVMAVCFCT 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2733774 2740493 - Sed0020210.2 Sed04g0381 708984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0381 417 CDD H3TH_FEN1-Euk 222 289 - -
Sed04g0381 417 Gene3D - 223 286 - -
Sed04g0381 417 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Sed04g0381 417 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788(InterPro)
Sed04g0381 417 SMART xpgn3 1 108 IPR006085 GO:0004518(InterPro)
Sed04g0381 417 SMART xpgineu 147 219 IPR006086 GO:0004518(InterPro)
Sed04g0381 417 Pfam XPG I-region 150 234 IPR006086 GO:0004518(InterPro)
Sed04g0381 417 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518(InterPro)
Sed04g0381 417 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 367 IPR006084 GO:0008409(PANTHER)|GO:0017108(PANTHER)
Sed04g0381 417 FunFam Flap endonuclease 1 10 222 - -
Sed04g0381 417 FunFam Flap endonuclease 1 219 286 - -
Sed04g0381 417 SMART 53exo3 29 299 IPR002421 GO:0003677(InterPro)|GO:0008409(InterPro)
Sed04g0381 417 CDD PIN_FEN1 4 332 - -
Sed04g0381 417 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788(InterPro)
Sed04g0381 417 Gene3D - 10 222 - -
Sed04g0381 417 SMART HhH_4 221 254 IPR008918 GO:0003677(InterPro)|GO:0003824(InterPro)
Sed04g0381 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Sed04g0381 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Sed04g0381 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Sed04g0381 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Sed04g0381 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Sed04g0381 417 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788(InterPro)
Sed04g0381 417 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 353 IPR036279 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0381 Sed-Chr4:2733774 Sed06g0577 Sed-Chr6:5034508 5.10E-10 dispersed
Sed04g0380 Sed-Chr4:2733774 Sed04g0381 Sed-Chr4:2733774 1.50E-202 tandem
Sed04g0381 Sed-Chr4:2733774 Sed04g0382 Sed-Chr4:2733774 2.20E-239 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0381 K04799 - mdm:103427661 692.96