Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0389 ATGACGAGGAAGAAGGTGAAGCTCGCTTACATTGCGAACGATTCCGCGAGGAAGGCGACGTTCAAGAAGAGGAAGAGAGGGTTGATGAAGAAGGTGAGTGAGTTGAGCACTCTTTGCGGGATCGAAGCTTGCGCAATCGTCTTCGGTCCCTATGATTCTCAGCCCGATCTTTGGCCTTCCGCTGTCGGAGTTCAACGTGTTCTTTCGCAGTTTAAGAACATGCCGGAGATGGAGCAGAGCAAGAAGATGGTAAACCAAGAAACCTTTCTGAGACAAAGGATAGCAAAAGCCAACGAGCAGCTAAAGAAGATGAGAAAAGACAACCGTGAAAAAGAGATCACAAGGCTAATGTTCCAAACCCTAACCGGAGCCAAAGGGCTGCAATCTCTCAACATGGTGGACCTAAACGACCTCGGTTGGCTCATCGACCAGAACCTCAAGGACATCACCAAACGCATCGAGTCCTTCCGAAAGCCGCCCGTGGAGGCCACGGTGGTCGAGAGGCCCCCACCGCCCCAACCACAGCCCCCGCAGACGGCGGCGTGGCTGATGGAGATGGTGAGCCCTCATGACCATATGGGGTTGGTTGGGGATGACATGCTTTTGCCTTTTGAAGATCATTGTTATAATAACGACCCTAATCCCATGTGGTCCAATGCCTTTTTCCATTAG 672 51.64 MTRKKVKLAYIANDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFGPYDSQPDLWPSAVGVQRVLSQFKNMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQTLTGAKGLQSLNMVDLNDLGWLIDQNLKDITKRIESFRKPPVEATVVERPPPPQPQPPQTAAWLMEMVSPHDHMGLVGDDMLLPFEDHCYNNDPNPMWSNAFFH 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2808705 2810176 + Sed0022320.1 Sed04g0389 708992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0389 223 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g0389 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g0389 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g0389 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g0389 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 153 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed04g0389 223 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Sed04g0389 223 Coils Coil 87 114 - -
Sed04g0389 223 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Sed04g0389 223 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g0389 223 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g0389 223 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed04g0389 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0389 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0389 Sed-Chr4:2808705 Sed08g1920 Sed-Chr8:33623589 1.30E-57 dispersed
Sed04g0389 Sed-Chr4:2808705 Sed02g0450 Sed-Chr2:41609753 2.20E-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g1935 . 1 315 Type I MADS-box Gene Family AT2G03060 52.2 4.7e-87 319.3
Sed13g0413 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 7.0e-37 152.1
Sed13g0413 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 4.8e-50 196.1
Sed07g1151 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.3e-49 192.6
Sed13g0960 . 3 213 Type I MADS-box Gene Family AT1G77950 52.7 3.0e-53 206.5
Sed04g0389 . 1 162 Type I MADS-box Gene Family AT5G48670 65.4 1.2e-54 211.5
Sed08g1920 . 1 157 Type I MADS-box Gene Family AT5G48670 61.1 5.6e-49 192.6
Sed07g1935 . 1 315 Type I MADS-box Gene Family AT2G03060 52.2 4.7e-87 319.3
Sed13g0413 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 7.0e-37 152.1
Sed13g0413 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 4.8e-50 196.1
Sed07g1151 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.3e-49 192.6
Sed13g0960 . 3 213 Type I MADS-box Gene Family AT1G77950 52.7 3.0e-53 206.5
Sed04g0389 . 1 162 Type I MADS-box Gene Family AT5G48670 65.4 1.2e-54 211.5
Sed08g1920 . 1 157 Type I MADS-box Gene Family AT5G48670 61.1 5.6e-49 192.6
Sed07g1935 . 1 315 Type I MADS-box Gene Family AT2G03060 52.2 4.7e-87 319.3
Sed13g0413 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 4.8e-50 196.1
Sed07g1151 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.3e-49 192.6
Sed04g0389 . 1 162 Type I MADS-box Gene Family AT5G48670 65.4 1.2e-54 211.5
Sed08g1920 . 1 157 Type I MADS-box Gene Family AT5G48670 61.1 5.6e-49 192.6
Sed13g0413 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 7.0e-37 152.1
Sed13g0960 . 3 213 Type I MADS-box Gene Family AT1G77950 52.7 3.0e-53 206.5
Sed07g1935 . 1 315 Type I MADS-box Gene Family AT2G03060 52.2 4.7e-87 319.3
Sed13g0413 . 1 165 Type I MADS-box Gene Family AT5G60440 62.5 4.8e-50 196.1
Sed07g1151 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.3e-49 192.6
Sed04g0389 . 1 162 Type I MADS-box Gene Family AT5G48670 65.4 1.2e-54 211.5
Sed08g1920 . 1 157 Type I MADS-box Gene Family AT5G48670 61.1 5.6e-49 192.6
Sed13g0413 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 7.0e-37 152.1
Sed13g0960 . 3 213 Type I MADS-box Gene Family AT1G77950 52.7 3.0e-53 206.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38034 PF00319 SRF-TF 2.70E-18 No_clan Sed TF