Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0392 | ATGGATTATCGAGGTTATAGTGGTCGGTTCGAAACAAACAACCCAAATAAAGGCAATGCTCGGGAGCAGGAACCTCTGGCTGATGACTTCATAGACGATTTTCACTTGCCCATCAACCATAAGCCAACAGAAAATGTTGATCTTGATAATGTGGAACAAGCATCATTGGATACACAATTACCTTCATCGAATGTGGGATATAAGCTTCTCCAGAAGATGGGCTGGAAAGGGAAGGGACTAGGCAAGGATGAACAAGGAATTGTTGAGCCGATAAAATCTGGAATTAGAGATCCCAAACTAGGAATTGGAAAACAAGAAGAAGACGATTTTTTCACCGCAGAGGAAAATATCCAGCGGAAAAAACTTGATGTTGAGTTGGAAGAGACGGAGGAACATGCGAAAAAACGGGAGGTTATAGCAGAACGTGTGGAGAAGATTCAAACTGAGGTCAAAGAAATACGAAAGGTTTTCTATTGTGATCTTTGCAACAAACAGTACAAATTGGCTATGGAATTTGAAGCTCATCTCAGCTCATATGATCACAATCATAGAAAGCGTTTTAAAGAAATGAGAGAAATGCATGGTACAAGCAGCCGGGATGACCGAAACAAGCGGGAACAGCAACGTGAAGAGAGGGAAATGGCAAAATTTGCTCAAATTGCGGATGCCCGTAAGAAGCAGCAGCAGATGCTGGAGCAACAAGAAAGATCCGCCGATGCGCCTGTTTCTACTGAACTTAGAAATGCAACATCACTTGCAGATCAGGATCAGCGAAAAACATTAAAATTTGGATTCTCTTCTAAAGGTGGCACCTCAAAGAACATTTTTGGTGGAGTTACAAAGAAACCAAAAGTAGCCAAGATAGCTTCAGTTTTCGGTAATGATAGTGATGAGGAGTAG | 900 | 41.67 | MDYRGYSGRFETNNPNKGNAREQEPLADDFIDDFHLPINHKPTENVDLDNVEQASLDTQLPSSNVGYKLLQKMGWKGKGLGKDEQGIVEPIKSGIRDPKLGIGKQEEDDFFTAEENIQRKKLDVELEETEEHAKKREVIAERVEKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKEMREMHGTSSRDDRNKREQQREEREMAKFAQIADARKKQQQMLEQQERSADAPVSTELRNATSLADQDQRKTLKFGFSSKGGTSKNIFGGVTKKPKVAKIASVFGNDSDEE | 299 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2849823 | 2854184 | + | Sed0027683.1 | Sed04g0392 | 708995 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0392 | 299 | SUPERFAMILY | beta-beta-alpha zinc fingers | 139 | 190 | IPR036236 | - | |
Sed04g0392 | 299 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 159 | 181 | IPR013087 | - | |
Sed04g0392 | 299 | MobiDBLite | consensus disorder prediction | 191 | 220 | - | - | |
Sed04g0392 | 299 | MobiDBLite | consensus disorder prediction | 191 | 278 | - | - | |
Sed04g0392 | 299 | PANTHER | FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED | 1 | 299 | - | - | |
Sed04g0392 | 299 | SMART | G-patch_5 | 60 | 105 | IPR000467 | GO:0003676(InterPro) | |
Sed04g0392 | 299 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Sed04g0392 | 299 | ProSiteProfiles | G-patch domain profile. | 62 | 107 | IPR000467 | GO:0003676(InterPro) | |
Sed04g0392 | 299 | Pfam | G-patch domain | 63 | 103 | IPR000467 | GO:0003676(InterPro) | |
Sed04g0392 | 299 | MobiDBLite | consensus disorder prediction | 233 | 274 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0392 | Sed-Chr4:2849823 | Sed01g0396 | Sed-Chr1:2997452 | 8.50E-07 | transposed | |
Sed04g0392 | Sed-Chr4:2849823 | Sed05g3717 | Sed-Chr5:45136745 | 8.50E-07 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0392 | - | - | - | 0.0 |