Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0392 ATGGATTATCGAGGTTATAGTGGTCGGTTCGAAACAAACAACCCAAATAAAGGCAATGCTCGGGAGCAGGAACCTCTGGCTGATGACTTCATAGACGATTTTCACTTGCCCATCAACCATAAGCCAACAGAAAATGTTGATCTTGATAATGTGGAACAAGCATCATTGGATACACAATTACCTTCATCGAATGTGGGATATAAGCTTCTCCAGAAGATGGGCTGGAAAGGGAAGGGACTAGGCAAGGATGAACAAGGAATTGTTGAGCCGATAAAATCTGGAATTAGAGATCCCAAACTAGGAATTGGAAAACAAGAAGAAGACGATTTTTTCACCGCAGAGGAAAATATCCAGCGGAAAAAACTTGATGTTGAGTTGGAAGAGACGGAGGAACATGCGAAAAAACGGGAGGTTATAGCAGAACGTGTGGAGAAGATTCAAACTGAGGTCAAAGAAATACGAAAGGTTTTCTATTGTGATCTTTGCAACAAACAGTACAAATTGGCTATGGAATTTGAAGCTCATCTCAGCTCATATGATCACAATCATAGAAAGCGTTTTAAAGAAATGAGAGAAATGCATGGTACAAGCAGCCGGGATGACCGAAACAAGCGGGAACAGCAACGTGAAGAGAGGGAAATGGCAAAATTTGCTCAAATTGCGGATGCCCGTAAGAAGCAGCAGCAGATGCTGGAGCAACAAGAAAGATCCGCCGATGCGCCTGTTTCTACTGAACTTAGAAATGCAACATCACTTGCAGATCAGGATCAGCGAAAAACATTAAAATTTGGATTCTCTTCTAAAGGTGGCACCTCAAAGAACATTTTTGGTGGAGTTACAAAGAAACCAAAAGTAGCCAAGATAGCTTCAGTTTTCGGTAATGATAGTGATGAGGAGTAG 900 41.67 MDYRGYSGRFETNNPNKGNAREQEPLADDFIDDFHLPINHKPTENVDLDNVEQASLDTQLPSSNVGYKLLQKMGWKGKGLGKDEQGIVEPIKSGIRDPKLGIGKQEEDDFFTAEENIQRKKLDVELEETEEHAKKREVIAERVEKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKEMREMHGTSSRDDRNKREQQREEREMAKFAQIADARKKQQQMLEQQERSADAPVSTELRNATSLADQDQRKTLKFGFSSKGGTSKNIFGGVTKKPKVAKIASVFGNDSDEE 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2849823 2854184 + Sed0027683.1 Sed04g0392 708995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0392 299 SUPERFAMILY beta-beta-alpha zinc fingers 139 190 IPR036236 -
Sed04g0392 299 ProSitePatterns Zinc finger C2H2 type domain signature. 159 181 IPR013087 -
Sed04g0392 299 MobiDBLite consensus disorder prediction 191 220 - -
Sed04g0392 299 MobiDBLite consensus disorder prediction 191 278 - -
Sed04g0392 299 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 1 299 - -
Sed04g0392 299 SMART G-patch_5 60 105 IPR000467 GO:0003676(InterPro)
Sed04g0392 299 MobiDBLite consensus disorder prediction 1 23 - -
Sed04g0392 299 ProSiteProfiles G-patch domain profile. 62 107 IPR000467 GO:0003676(InterPro)
Sed04g0392 299 Pfam G-patch domain 63 103 IPR000467 GO:0003676(InterPro)
Sed04g0392 299 MobiDBLite consensus disorder prediction 233 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0392 Sed-Chr4:2849823 Sed01g0396 Sed-Chr1:2997452 8.50E-07 transposed
Sed04g0392 Sed-Chr4:2849823 Sed05g3717 Sed-Chr5:45136745 8.50E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0392 - - - 0.0