Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0412 ATGGATACGATTGTTCCTAACCTAGACGCGCCGAGGATTTCCGATTCGGCGGAGCAGCGGCCGAGTAAGCGCCGCAAAACCGAATCGGAGAATCAGGCGGCGGATATTCACGGCGCGGAGTCGACGGATTTGAGAAAACGGTGGAGAACGGAATCGGAGCAGCAGATTTACTCTTCCAAATTAGTCGACGCTCTGCATCGAGTAAGTTCAAATTCCGCATCTCCGCGGGCGAGATCTTCGATTAACGGCCGGAAAGTACGCGAGACGGCGGACCGAGTCCTCGCCGTCGCCGCGAAAGGCAAGACGCGGTGGAGCAGAGCGATCTTAACAAATCGACTCGATCTCAAACTCAAGAAGGTGAAACTCGCCGGAAATTGTAGCCGGCCGAAGAAATTGAAAACGTACAAGGCGAGGAAAATGCCGGCGGTGCAGCGGAAAGTTCGAACTCTCGGCCGGCTGGTTCCTGGATGCCGGAAAATCTCATTTCCGAATCTTCTTGAAGAAGCTACCGATTACATCGCCGCTTTACAGATGCAGGTACGCGCCATGGCTGCTGTGGCGGAGCTTCTCGCCGGCGCTCCGGCGGATCGTCAGAGCTTTAGAACAAATTCGTAG 615 55.12 MDTIVPNLDAPRISDSAEQRPSKRRKTESENQAADIHGAESTDLRKRWRTESEQQIYSSKLVDALHRVSSNSASPRARSSINGRKVRETADRVLAVAAKGKTRWSRAILTNRLDLKLKKVKLAGNCSRPKKLKTYKARKMPAVQRKVRTLGRLVPGCRKISFPNLLEEATDYIAALQMQVRAMAAVAELLAGAPADRQSFRTNS 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3013345 3014919 - Sed0008229.1 Sed04g0412 709015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0412 204 MobiDBLite consensus disorder prediction 16 47 - -
Sed04g0412 204 MobiDBLite consensus disorder prediction 1 47 - -
Sed04g0412 204 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 191 IPR036638 GO:0046983(InterPro)
Sed04g0412 204 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 47 190 IPR044660 GO:0006355(InterPro)
Sed04g0412 204 CDD bHLH_AtIBH1_like 132 183 IPR044549 GO:0006355(InterPro)
Sed04g0412 204 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1982 Sed-Chr3:13774846 Sed04g0412 Sed-Chr4:3013345 1.10E-41 dispersed
Sed04g0412 Sed-Chr4:3013345 Sed04g3086 Sed-Chr4:41862879 1.00E-35 dispersed
Sed11g0426 Sed-Chr11:4051328 Sed04g0412 Sed-Chr4:3013345 3.80E-36 wgd
Sed02g1131 Sed-Chr2:48525292 Sed04g0412 Sed-Chr4:3013345 3.50E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0412 - - - 0.0