Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0413 ATGGTTTGTGAAGAAGAAGCTCTGATCCAAAAGATCACCGATTTGTACGAACAAATCAAGAGCCTTGAGAGCCTAAAGCCTTGCAACCATGTCGACACTCTGTTCACCGAGCTGGTGGTCACGTGCATGCCACCCACCAGCCCTCATTTCCATATCAGTTCACTTTCTGAGCCTCTTCAGCACATGAGATCCAACCTCATAAGGCTCTGCGGCCAAGCTGAGTCCCTTTTGGAGTCCCATTTCTCTCATCTCTTGGCTCAGTTTGACTCCCCTCTTGCTAACCTACACCTCTTCCCTTACTTCTCTAACTACCTCAAGCTTAGCCTTCTTGAGTTCTCCATTCTTCGCCGCCACTGCGCCGTGCTCCCCTCCGCCGTTGCGTTTGTCGGCTCTGGCCCCCTCCCCCTCACCTCCATCGTCCTCGCCACCCGCCATCTTACCTCTTCTGCCTTCCACAATTATGATCTCGATCCCCTGGCTAATTCTCAGGCATCGAAATTGGTATCGCTCGACCCGGATCTGAAGAAGAGGATGGTGTTTCACACGTGCGACATCATGAAAGTGACGGACGAGCTGAAGCAATACGAGGTTGTGTTTTTGGCAGCCCTAGTAGGAATGGATAAAGAGGAGAAATTAAAAGTGATCAAACATTTGTCGGAGTTCATGTCGGAAGGGGCTTATTTGATGGTGAGAAGTGCTCATGGAGGAAGAGCTTTTCTTTATCCTGTGGTTGAAGATTGTGATTTGGTAGGGTTTGAGGTTCTATCTGTGTTCCATCCTACCGACGAGGTTATAAACTCGGTTATAATCGCACGAAAAAAGACGAGATTCGATCACGACAATGATCGCAATCACAACGATGATTTTTCTGTTGATAAACAAGAGGAAGATGATCATGAGAAGGTGGTAATTAGTAGTATTGGTATTGAAAATGGTGTTGTGCATAATAATAATAATAATAATAAATGTTGTGATGAAATTCAGAGCTTCAACAATCATGGAGGTATGGTTGAGGAATGTGCCATGGAAGCTGAATAA 1038 46.05 MVCEEEALIQKITDLYEQIKSLESLKPCNHVDTLFTELVVTCMPPTSPHFHISSLSEPLQHMRSNLIRLCGQAESLLESHFSHLLAQFDSPLANLHLFPYFSNYLKLSLLEFSILRRHCAVLPSAVAFVGSGPLPLTSIVLATRHLTSSAFHNYDLDPLANSQASKLVSLDPDLKKRMVFHTCDIMKVTDELKQYEVVFLAALVGMDKEEKLKVIKHLSEFMSEGAYLMVRSAHGGRAFLYPVVEDCDLVGFEVLSVFHPTDEVINSVIIARKKTRFDHDNDRNHNDDFSVDKQEEDDHEKVVISSIGIENGVVHNNNNNNKCCDEIQSFNNHGGMVEECAMEAE 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3026762 3028988 - Sed0000121.1 Sed04g0413 709016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0413 345 Gene3D Vaccinia Virus protein VP39 5 275 IPR029063 -
Sed04g0413 345 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 278 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Sed04g0413 345 Coils Coil 5 25 - -
Sed04g0413 345 PANTHER NICOTIANAMINE SYNTHASE 3 5 301 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Sed04g0413 345 Pfam Nicotianamine synthase protein 5 275 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1966 Sed-Chr3:13667117 Sed04g0413 Sed-Chr4:3026762 2.60E-94 dispersed
Sed11g0754 Sed-Chr11:12544006 Sed04g0413 Sed-Chr4:3026762 6.60E-73 transposed
Sed11g0410 Sed-Chr11:3960990 Sed04g0413 Sed-Chr4:3026762 5.00E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0413 K05953 - csv:101218907 502.286