Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0424 ATGAGTCAGACGGAAGTATCGAGGATTATACCCCCTCTCGTTCCGCTCGCTACTTTGATTGGTCGCGAGCTGAGGAACGAGAAGGTTGAGAAGCCTTTTGTGAAGTATGGACAGGCTGCTTTGGCAAAGAAAGGAGAGGATTACTTTCTGATTAAACTCGATTGCCAGCGTATTCCTGGAAATCCTTCAACTGCATTTTCTGTTTTTGCGATTTTTGATGGGCATAATGGCATATCTGCTGCTATCTTTGCAAAGGAACATTTACTGGGTAATGTCTTAAGTGCAATCCCTCAAGGGGCTAATCGAGAAACCTGGCTACAAGCCCTTCCTCGAGCATTAGTTGCTGGTTTTGTCAAAACTGACATAGAGTTTCAGCAGAAAGGGGAAACTTCTGGAACTACTGTTACATTTGTTGTAATTGATGGATGGACTGTTACTGTTGCATCCGTGGGAGATTCACGGTGCATATTAGACACCCAGGGAGGTGTGGTTTCACTATTGACAGTGGATCATAGGCTGGAGGAAAATGAGGAAGAGAGGGAACGTGTAACTGCAAGTGGTGGTGAGGTTGGAAGGCTCAATGTCTTTGGCGGCAATGAGGTTGGTCCACTCCGCTGCTGGCCTGGTGGCTTATGTCTTTCTAGGTCCATTGGTGATACAGATGTCGGTGAATATATCGTCCCAATACCACATGTTAAGCAAGTGAAGCTTTCTAATGCTGGCGGAAGGCTGATAATTGCTTCCGATGGTATTTGGGATGCTTTATCGTCTGATTTGGCTGCAAAGTCTTGTCGAGGTTTACCTGCAGAGCTTGCTGCTAAGCTAGTTGTGAAGGAGGCTTTGCGGTCAAGGGGATTGAAGGACGATACAACTTGCTTAGTTGTTGATATTATACCGTCCGAGCAACCTATATTATTACCACCAACTCCAAGGAAGAAGCAAAATGTGCTTACCTCACTCTTTGGGAAGAAATATCAAAACTCTTTGGGGAAATCTGCTAATAAACTTTCTGCTGTTGGAGTTGAGGAGTTGTTCGAAGAAGGTTCTGCTATGCTTGCTGAAAGGCTAGGCAAAGATTCTCCTTCAGATCCAAACTCAGGGAACTTCAAATGTGCAGTCTGTCAAGCGGATCAACCCTCGAACGAAAATTTGTCAATGAATTCGGGGCCTTTCTTTTCGCCGTCGTCAAGACCATGGGAAGGTCCATTCCTCTGTGCAACTTGTCGAAGAAAGAAAGACGCCATGGAAGGAAAAAGGCCAACAAAACCTACCGTAACCGTTTAG 1284 45.33 MSQTEVSRIIPPLVPLATLIGRELRNEKVEKPFVKYGQAALAKKGEDYFLIKLDCQRIPGNPSTAFSVFAIFDGHNGISAAIFAKEHLLGNVLSAIPQGANRETWLQALPRALVAGFVKTDIEFQQKGETSGTTVTFVVIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENEEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSDLAAKSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSEQPILLPPTPRKKQNVLTSLFGKKYQNSLGKSANKLSAVGVEELFEEGSAMLAERLGKDSPSDPNSGNFKCAVCQADQPSNENLSMNSGPFFSPSSRPWEGPFLCATCRRKKDAMEGKRPTKPTVTV 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3117903 3122184 + Sed0000188.1 Sed04g0424 709027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0424 427 SMART PP2C_SIG_2 51 297 IPR001932 -
Sed04g0424 427 Pfam Protein phosphatase 2C 62 280 IPR001932 -
Sed04g0424 427 SUPERFAMILY PP2C-like 43 297 IPR036457 -
Sed04g0424 427 Gene3D - 38 302 IPR036457 -
Sed04g0424 427 ProSiteProfiles PPM-type phosphatase domain profile. 32 297 IPR001932 -
Sed04g0424 427 SMART PP2C_4 23 295 IPR001932 -
Sed04g0424 427 FunFam probable protein phosphatase 2C 5 35 302 - -
Sed04g0424 427 PANTHER PROTEIN PHOSPHATASE 36 296 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed04g0424 427 CDD PP2Cc 43 297 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0424 Sed-Chr4:3117903 Sed07g2106 Sed-Chr7:36563505 2.10E-168 dispersed
Sed04g0424 Sed-Chr4:3117903 Sed07g2105 Sed-Chr7:36563505 2.10E-168 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0424 - - - 0.0