Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0428 ATGGGTTCTTTTCTCAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATTAATGTTGGCCAGAAGCAAGATGCTTTGCAAGCTCTTCATGATCTAATTACTTCAAAGAAATATCGAGCATGGCAGAAACCGCTTGAAAAGATTATGTTTAAGTATGTCGAACTTTGTGTGGAAATGAGGAAAGGAAGGTTTGCAAAGGATGGTTTAATTCAATACCGTATTGTTTGCCAACAAGTCAATGTTACTTCTCTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCTACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCTTTAGAAGAAGCTCTGGATGTTGATGACTTGGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGAGAGAAGGGAAAAGACAGATCTGATCGAGAACTTGTTACTCCTTGGTTTAAATTTCTGTGGGAGACTTATCGAACAGTTCTTGAGATACTAAGGAATAACTCTAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCATTCCAGTTCTGTAAGCTGTATAAAAGGACAACAGAATTTCGTAGATTATGTGAAATTATCCGAAATCATCTTGCTAATCTTAATAAGTACAGAGACCAAAGAGATCGTCCTGACCTATCTGCCCCTGAGAGCTTGCAGTTGTACCTTGACACAAGATTTGAACAGCTAAAAGTTGCCACAGAGCTTGAGCTCTGGCAGGAAGCTTTTCGTTCTGTTGAAGATATTCATGGTTTGATGTGCATGGTGAAGAAAACTCCCAAACCATCGTTGATGGTTGTTTATTATGTCAAATTAACAGAGATCTTCTGGATATCTGATAGCAATCTATATCATGCCTATGCATGGCTTAAACTTTTCTCCCTTCAAAAGAGTTTCAACAAAAATCTAAGCCAGAAGGACCTACAGTTGATAGCATCATCTGTTGTTTTAGCAGCCCTTGCAGTCCCCCCTTATGATTCCAAGCATGGTGCATCTCATCTAGAACTTCAACATGAGAAGGAGCGTAATTTGAGGATGGCTAATCTTCTAGGGTTCAATTTAGATTCGAAACTTGAAAGTAGAGATGTGCTTTCAAGGGCAAATCTCCTTTCTGAATTGGTATCTAAAGGAGTCCTGAGCTGTGCAACTCAGGAAATTAAAGACCTTTATCATCTTTTGGAGCATGAGTTCTTGCCACTTGATCTTGCATTGAAATTGCAACCCTTGGTGACCAAAATTTCGAAACTTGGAGGTAAGCTTTCATCAGCCTCATCTGTACCCGAAGTGCAATTATCCCAATATGTTCCAGCTCTTGAAAAACTTGCTTCCCTGAGGCTTCTTCAGCAGGTCTCCCAAGTGTACCAGACGATGAAAATTGAGTCCCTATCCAAGATTATCCCATTTTTGGATTTTTCTGCTGTTGAAAAAATATCGGTTGATGCAGTTAAACAGAATTTCATTGCCATGAAAGTTGATCATTCACGAAATGTCGTGTTATTTGGAAATCTGGGTATTGAATCAGATGGACTTCGTGATCACCTGACTGTTCTTGCTGAATCCCTTAACAAAGCAAGATCCATGATCCACCCTCCAGTTAAGCAAGCATCAAAAATAGGTGAAATGCTGCCTGATTTAGCAGATGTTGTTGATAAAGAGCACAAGAGGCTTCTTGCTCGGAAATCAATAATTGAAAAAAGGAAGGAAGAGCAGGAACGACAACTTTTGGAAATGGAACGCGAGGAGGAATCAAAAAGGTTAAAATTACTGAAGATAACTGAAGAGGCTGAGCAGAAGCGGCTTGCTGCAGAGTATGAACAAAGGAAAAATCAACGGCTTCGCAGGGAAATTGAAGAGCGAGAGCTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAGCGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCAGTTCTTGATTCTGAAAAGTTGACGAAACAATCATTAATGCAATTGGCCCTTACTGAACAATTAAGGGAAAGGCAGGAAATGGAGAAGAAATTACAAAAGCTTGCCAAAAGTATGGATCATATTGAAAGAGCAAGAAGAGAAGAAGCAGCAACGTTAATTGAAGCTGACTTTCAGCAACGTTTGCTTTTAGAGAAGAAGATTCATGAAGATGATCAGAAGCGGGAGGTTGAGTTAAGCAAGCAGCGCCATGAAGGTGATCTCAAGGAGAAGAATAGATTGTCTAAAATGTTTGGGAATAAGAATATTTTTAAAGAAAGAGTCGTCAGTCGTCGCCAAGAAGAGTTCAACAAACGCAGAGCTGATAGAGAAGAAAAGATCAGGCAAATAGTTCAGTCCCTGAAAACGGAAAGGAAGATTATGAGGATGAAAATATTTTATGTAAGGCGTGAAGAGGAGAGGCTCAGAATATTGCGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAAGCTGAGAGGAGGAAAAGGGAGGATGCTGAGCGCAAGGCGAAATTGGATGAAATTGCTGAGAAGCAGAGGCAGAGGGAGCGAGAACTGGAAGAAAAAGAAAGGCTGCGGAAAGAAATGCTCTTTGGTGGTGGCAGATCAGGGGATGCTCCTGCTCGACCTGATGTTGCGCCTGCTGCTCGGCCTCAGGAGTCTGGTGCTGCTGCTCCTGCTGCCGCTGCTGCTGCTGCGGCGGCTGCCCCATCCCCCGGGAAGTACGTGCCGAAGTACCGACGCACTGAAAGCTCCAGCCCTAATGCACCACCTCTTGATTCTGATCGATGGGGAAGCAGCAAGCCTGACAGTCGACCTTCTCAGCCGGACAGCTGGCGCAATGATGATCGTGATCGTAGACCTGCATTTGGTGGAAGTTCAAGGTGGTCCTCGTCCCGAGTTTCTGCTCGCGGAAGCACAGATCGCTGA 2919 43.06 MGSFLKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLEKIMFKYVELCVEMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKLYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDSNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVVLAALAVPPYDSKHGASHLELQHEKERNLRMANLLGFNLDSKLESRDVLSRANLLSELVSKGVLSCATQEIKDLYHLLEHEFLPLDLALKLQPLVTKISKLGGKLSSASSVPEVQLSQYVPALEKLASLRLLQQVSQVYQTMKIESLSKIIPFLDFSAVEKISVDAVKQNFIAMKVDHSRNVVLFGNLGIESDGLRDHLTVLAESLNKARSMIHPPVKQASKIGEMLPDLADVVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLKLLKITEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLTKQSLMQLALTEQLRERQEMEKKLQKLAKSMDHIERARREEAATLIEADFQQRLLLEKKIHEDDQKREVELSKQRHEGDLKEKNRLSKMFGNKNIFKERVVSRRQEEFNKRRADREEKIRQIVQSLKTERKIMRMKIFYVRREEERLRILREEEEARKREEAERRKREDAERKAKLDEIAEKQRQRERELEEKERLRKEMLFGGGRSGDAPARPDVAPAARPQESGAAAPAAAAAAAAAAPSPGKYVPKYRRTESSSPNAPPLDSDRWGSSKPDSRPSQPDSWRNDDRDRRPAFGGSSRWSSSRVSARGSTDR 972
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3130345 3139660 - Sed0023948.2 Sed04g0428 709031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0428 972 MobiDBLite consensus disorder prediction 938 953 - -
Sed04g0428 972 Coils Coil 603 649 - -
Sed04g0428 972 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 3 942 IPR027512 GO:0001732(PANTHER)|GO:0002188(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0043614(PANTHER)|GO:0071540(PANTHER)|GO:0071541(PANTHER)
Sed04g0428 972 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Sed04g0428 972 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Sed04g0428 972 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
Sed04g0428 972 Coils Coil 93 120 - -
Sed04g0428 972 Gene3D - 269 346 - -
Sed04g0428 972 Gene3D - 361 494 - -
Sed04g0428 972 Gene3D UVR domain 217 268 - -
Sed04g0428 972 Pfam eIF3a, PCI domain, TPR-like region 8 407 IPR054711 -
Sed04g0428 972 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 950 IPR027512 GO:0005852(InterPro)
Sed04g0428 972 Coils Coil 799 858 - -
Sed04g0428 972 MobiDBLite consensus disorder prediction 955 972 - -
Sed04g0428 972 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
Sed04g0428 972 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Sed04g0428 972 MobiDBLite consensus disorder prediction 814 861 - -
Sed04g0428 972 Coils Coil 669 699 - -
Sed04g0428 972 Coils Coil 561 600 - -
Sed04g0428 972 MobiDBLite consensus disorder prediction 814 972 - -
Sed04g0428 972 Pfam PCI domain 438 508 IPR000717 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0427 Sed-Chr4:3130345 Sed04g0428 Sed-Chr4:3130345 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0428 K03254 - csv:101209344 1469.91