Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0430 ATGGATCATTTGTTCTTGAGGTTCAATGAACTAACAAAGTCACTTAGAAATAAGAAATGGGGAAACTCTGAAAATGCTTCTGTTGTGAGTGGAAGAGAAGCTGCAGAAGCAATGGCAAAGTCAGCAAAGAAGAAGGATATGATCATACATGGTTCCGGGAGTATAAATATTGACGGTTCGAGCAACTTCGTCTCAAGTTTTTCGAAAAGGGGAGAGAAAGGAATCAATCAGGACCGCTGCATTGTGTGGGAGGAATTTGGGTGTCAAAAGGATATGATGTTTTGTGGAGTTTTTGATGGCCATGGACCATGGGGCCATTTTGTTGCAAAAAAGGTTAGAAAGTCAATGCCAACTGCTCTGCTCTGCAATTGGCAAGAAACACTTGTTCAAACTGCTCTTCATCAACATTTGGAACTCAACTTAGGTAAAGCACATCTACAGTTCAATTTATGGGAGCATTCTTATATAGAAGCCTGTGCTACCGTCGATCAAGAACTCGCGCAACAACGTAAAATCGACACGTTTCATAGTGGAACAACAGCCCTTTCCCTCGTTCGAAAAGGTGATGTAATTGTTATTGCGAACATTGGCGACTCTCGGGCAGTGTTGGCAACGACTTCTGATGATGGAAACTCGGTACCGTTACCAATTCAGCTCACTATTGATTTCAAGCCGAATCTACCTCAGGAGGCCGAGAGGATAGCGCAATGCAATGGGAGGGTTTTCTGCTTGCAAGATGAACCGGGGACTCACCGTCTTTGGCTTCCGAACGGGGAAACACCGGGGCTGTCGATGTCAAGATCATTCGGCGATTTTTGCGTTAAGCAATTTGGACTCATTTCCATGCCTGATGTAACACAAAGAACTGTAACCAGCAAAGACTTATTTGTTGTACTTGCAACTGATGGGATATGGGATGTCGTCTCGAATCAAGAAGCAGTGCAGATCGTACATTCGACGGTAGATCGAGCAAAATCAGCTCGACGGTTGGTTGATTATGCTACTCGAGCATGGAAGCAGAAGAGACCAGGAATTGCAGTGGACGACATGTCGGTTATCGTCCTATTCCTCCATTCTTCACCTTTGCATCAACAAGCTTTTGTTGTAGCTCCATTGTAA 1119 44.24 MDHLFLRFNELTKSLRNKKWGNSENASVVSGREAAEAMAKSAKKKDMIIHGSGSINIDGSSNFVSSFSKRGEKGINQDRCIVWEEFGCQKDMMFCGVFDGHGPWGHFVAKKVRKSMPTALLCNWQETLVQTALHQHLELNLGKAHLQFNLWEHSYIEACATVDQELAQQRKIDTFHSGTTALSLVRKGDVIVIANIGDSRAVLATTSDDGNSVPLPIQLTIDFKPNLPQEAERIAQCNGRVFCLQDEPGTHRLWLPNGETPGLSMSRSFGDFCVKQFGLISMPDVTQRTVTSKDLFVVLATDGIWDVVSNQEAVQIVHSTVDRAKSARRLVDYATRAWKQKRPGIAVDDMSVIVLFLHSSPLHQQAFVVAPL 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3145711 3149967 - Sed0007861.1 Sed04g0430 709033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0430 372 SUPERFAMILY PP2C-like 62 358 IPR036457 -
Sed04g0430 372 Gene3D - 56 359 IPR036457 -
Sed04g0430 372 CDD PP2Cc 62 357 IPR001932 -
Sed04g0430 372 FunFam Probable protein phosphatase 2C 34 54 359 - -
Sed04g0430 372 PANTHER PROTEIN PHOSPHATASE 44 356 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed04g0430 372 ProSiteProfiles PPM-type phosphatase domain profile. 63 357 IPR001932 -
Sed04g0430 372 SMART PP2C_4 54 355 IPR001932 -
Sed04g0430 372 Pfam Protein phosphatase 2C 87 336 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1939 Sed-Chr3:13478728 Sed04g0430 Sed-Chr4:3145711 6.70E-139 dispersed
Sed04g0430 Sed-Chr4:3145711 Sed04g1773 Sed-Chr4:32365050 2.50E-101 dispersed
Sed11g0391 Sed-Chr11:3739441 Sed04g0430 Sed-Chr4:3145711 2.10E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0430 - - - 0.0