Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0442 ATGTCAAGAGTTTCTTTAGCCATTCATTTTTTTATGTTCATTTTTATTCCTGCATTATTACAAGTTTCTTCCATGGATGTTATCTATCCAAACGAGCAAAATAATGCTATACAGTCCATGATTTCCCAGATTTGTGCAGATATTGAAGATCGAAATTCCTGCATTTCAAACATACATCTTGAGTTGGGAAGAAGTGTGAACTCACATCCAAGTTCTGTCTTGAGTGCTGCAATTAGAGCAACTCTTAATGAAGCAAGACGAGCCATAGAGTCTATAACGAAGTTCAGCACATTCTCATTTAGCTACCGTGAGGAAATGGCAATCGAGGACTGCAAGGAGCTTCTTGATTTCTCTGTGTCAGAACTTGCCTGGTCGTTAGCCGAGATGAAAAAGATTCGTGCAGGTGAAAATGAAGCTCCGGATGAAGGGAACCTAAAAGCATGGCTGAGCGCTGCTCTTAGCAATCAAGACACATGCCTTGAAGGCTTCGAGGGCACAGACAGGCACATTGTAAGTTTCATTAGAGGGAGTTTGAAGCAAGTTACTTTGCTCATTAGTAATGTGTTGGCATTGTACACCCAATTACACAGCTCCCCATTGCAACCCCCACAAAATGAAACAATGGAGAAAACCAAAAGTGCAGAGTTTCCGGGTTGGATGACGGACAGCGACCACAAGCTTGTGAAATCTCATCCACACAGTGTCCATATTGATGCAATCGTGGCTTTGGATGGAAGTGGCGATTTTCGCTCGATCACAGAAGCTGTAAATGAAGCTCCAAATTATAGTAATAGAAGGTACCTCATATATGTGAAGAAGGGAGTATACAAAGAAAATATCGACATGAAGCGAAAGAAAACAAACATAATGTTTATTGGAGACGGTATCGGAGAAACGGTGGTGACAGGAAGTCGCAATTTTCTTCAAGGATGGACTACTTTCAGAACTGCAACTGTTGCTGTTTCCGGGAGGGGATTCATAGCAAGAGACATGACATTTCGTAACACGGCTGGACCGGAAAACCATCAGGCAGTGGCACTCAGAGTCGACTCCGATCAATCAGCCTTCTATCGGTGCAGCTTCGAAGGCTATCAAGACACGCTTTACGTCCACTCTCTTCGTCAATTTTACAGGGAATGCAACATATACGGCACGATAGACTACATCTTCGGCAATGGTGCAGCAGTGTTCCAAAAGTGTAACATCTACACCAGAGTTCCACTCCCTCTCCAGAAGGTCACAATCACGGCTCAAGGTCGAAAATCTCCACATCAGAGTACTGGTTTTTCGATCCAAGATAGCTTTATTTATGCAACTCAACCAACATATCTAGGAAGACCATGGAAGCTATATTCAAGGACTGTGTTCTTGAACACTTACATGAGTGGCTTGGTACAACCCAGAGGGTGGCTTGAGTGGTATGGCAATTTTGCTTTAAGCACATTGTGGTATGGAGAGTATAAGAACTATGGACCTGGTGCATCCCTTTCTGGTCGGGTCAAATGGCTCGGGTATCATGATATTCAAGATGCTGCCGTGGCTAGGTTCTTCACCTCTGAGCACTTCATCGGTGGTCGATCCTGGTTGCCGAGGACGGGTGTTAAGTTCGCACTTGGATTGAGTAATTAA 1629 43.77 MSRVSLAIHFFMFIFIPALLQVSSMDVIYPNEQNNAIQSMISQICADIEDRNSCISNIHLELGRSVNSHPSSVLSAAIRATLNEARRAIESITKFSTFSFSYREEMAIEDCKELLDFSVSELAWSLAEMKKIRAGENEAPDEGNLKAWLSAALSNQDTCLEGFEGTDRHIVSFIRGSLKQVTLLISNVLALYTQLHSSPLQPPQNETMEKTKSAEFPGWMTDSDHKLVKSHPHSVHIDAIVALDGSGDFRSITEAVNEAPNYSNRRYLIYVKKGVYKENIDMKRKKTNIMFIGDGIGETVVTGSRNFLQGWTTFRTATVAVSGRGFIARDMTFRNTAGPENHQAVALRVDSDQSAFYRCSFEGYQDTLYVHSLRQFYRECNIYGTIDYIFGNGAAVFQKCNIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSFIYATQPTYLGRPWKLYSRTVFLNTYMSGLVQPRGWLEWYGNFALSTLWYGEYKNYGPGASLSGRVKWLGYHDIQDAAVARFFTSEHFIGGRSWLPRTGVKFALGLSN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3267928 3270023 + Sed0011754.1 Sed04g0442 709045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0442 542 PANTHER PECTINESTERASE 12 530 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed04g0442 542 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 197 IPR035513 -
Sed04g0442 542 ProSitePatterns Pectinesterase signature 1. 263 282 IPR018040 -
Sed04g0442 542 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 196 IPR035513 -
Sed04g0442 542 Pfam Plant invertase/pectin methylesterase inhibitor 40 191 IPR006501 GO:0004857(InterPro)
Sed04g0442 542 SUPERFAMILY Pectin lyase-like 237 539 IPR011050 -
Sed04g0442 542 CDD PMEI-like_4 52 195 - -
Sed04g0442 542 FunFam Pectinesterase 232 540 - -
Sed04g0442 542 ProSitePatterns Pectinesterase signature 2. 382 391 IPR033131 -
Sed04g0442 542 Gene3D - 233 540 IPR012334 -
Sed04g0442 542 Pfam Pectinesterase 238 525 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed04g0442 542 SMART PMEI_2 36 191 IPR006501 GO:0004857(InterPro)
Sed04g0442 542 NCBIfam pectinesterase inhibitor domain 11 196 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0442 Sed-Chr4:3267928 Sed07g0565 Sed-Chr7:4262324 3.30E-118 dispersed
Sed13g0215 Sed-Chr13:1420979 Sed04g0442 Sed-Chr4:3267928 9.10E-10 dispersed
Sed13g0216 Sed-Chr13:1430631 Sed04g0442 Sed-Chr4:3267928 4.60E-09 dispersed
Sed04g0442 Sed-Chr4:3267928 Sed04g0443 Sed-Chr4:3273430 1.10E-97 tandem
Sed04g0782 Sed-Chr4:6389881 Sed04g0442 Sed-Chr4:3267928 1.50E-60 transposed
Sed04g1060 Sed-Chr4:14840518 Sed04g0442 Sed-Chr4:3267928 1.10E-128 transposed
Sed02g1163 Sed-Chr2:48755114 Sed04g0442 Sed-Chr4:3267928 4.70E-99 wgd
Sed04g0442 Sed-Chr4:3267928 Sed04g3998 Sed-Chr4:47705999 3.40E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0442 K01051 - csv:101202977 1013.83