Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0443 ATGGGTTATAAAGATGATGGTGATGCTCAAAACAAGAAAAGATACGCCATAATCGGCGTCTCGTCGATGTTGCTGGTGGCGATGGTGGTAGCAGTGATGGTCGGTGTCAACCTAAACCAAGATGGATCGAGTGATACGGCAGCTGAAAACAAGGCGAATGAAATATCTTCGTCTATGAAAGCGATTAAATCGATTTGCCAGCCTACTGATTACAAAAAAGAATGTGTTGCTAGCCTTAAATCTGCTGGTAACAACTCTTCAGATCCTAAGGAATTGGTTCAAGCTGGGTTTATGGCTGCTGTGAAATTGATCCAAGCCGCTGCTAATAAATCCGTCACCTTGCAACAACTTGAGAAAGATAATAGAACTTCCTTAGCCCTTGCTGGCTGTAAAGAGCTCATGGATTTCGCCGTTGGCGAGTTTAAGCACTCGATGGAAAAGCTTGGGGAGTTCGACATTAGTAAACTCGACGAGATGTTGATCGATATCAAGATCTGGATCAGCGCCACCATCTCTTATCAGGAAACTTGTTTGGATGGGTTTGAGAACACAACAGGCAACGCGGCGGAAAAGATGAAGAAGGCATTGAAGACGTCGATGCGATTGAGTAGCAACGCATTGGCAATGGTGTCGCAGATCTCCTCCATGTTGACAGATTTGCAAATTCCCGATATGAGTCGAAAACTTCTTGAGATTCAAGTTATTGGGCACCACGATTACGATTACCTCGATTGGGCTAGGCCCAAGATGAGCAGCATCGATTGGGCAGAGTCCAAGATGCGCGGTCTCCTCGCAGCATCATCGACGAAGCCCGACATTGTGGTGGCCAAGGATGGAAGTGGGCAGTTCAAGACAATTCAAGAGGCTCTAAACAAAGTTCCATTTAGAAAGGACAACAAAACTTTTGTTATCCATATCAAGGAAGGAGTGTATCAAGAATACATTACCATACCCATAACCCTTACACATTTGACACTTATTGGTGATGGCCCTAAAAAAACCATCATTACTGGAAACAAAAACTTTGTTGATGGCATCCCCACCCTTCAAACTGCGACAGTTGCTGTAACACCCGAGCATTTCATTGCTCGAGGTATCGGGTTTGTGAACACGGCCGGAGCAGAGAAGCACCAAGCAGTGGCACTACGAGTCCAAGCAGACAAAGCAATATTCTACGACTGCGAGATGCATGGTTACCAAGACACCCTCTACGCGCACACCATGCGTCAATTCTACCGCGACTGCACCATTTCCGGCACGATCGACTTCGTGTTCGGCGACGCGGCGACCGTGTTCCAAAACTGCAACTTCTTGGTCCGCAAGCCGCTCCCGAACCAACAAAACATAGTAACAGCACACGGGCGGAAGGAGAGACGCCAGCCCTCGGCCTTGATCATCCAAGGGTCGACGATCAAGCCCGACACCGACTTGATGCCGGTTAAGGACCAGTTCGAGTCGTATCTAGGCCGGCCATGGAAAGAATATTCTAGAACCATCATTATGGAAACATACATTGATGACTTCATCCAACCACAAGGGTGGTTGCCATGGACAGGTGATTGGGGCTTGAAGACTTGCTTTTACACAGAGTACAACAATTATGGGCCTGGATCCGACAAGGCCCAACGGGCCCGATGGAGAGGAATTAAGACCATTACGCCGGCCCATGCTTTGGATTTCACGCCGGGTCGGTTTATTTCCGGCGATAGATGGATTAAGTCCACCGGAATTCCGTACGCCGCCGGCATGACCAAGGGCGGCGCCGGGACTGGCCATTGA 1779 48.45 MGYKDDGDAQNKKRYAIIGVSSMLLVAMVVAVMVGVNLNQDGSSDTAAENKANEISSSMKAIKSICQPTDYKKECVASLKSAGNNSSDPKELVQAGFMAAVKLIQAAANKSVTLQQLEKDNRTSLALAGCKELMDFAVGEFKHSMEKLGEFDISKLDEMLIDIKIWISATISYQETCLDGFENTTGNAAEKMKKALKTSMRLSSNALAMVSQISSMLTDLQIPDMSRKLLEIQVIGHHDYDYLDWARPKMSSIDWAESKMRGLLAASSTKPDIVVAKDGSGQFKTIQEALNKVPFRKDNKTFVIHIKEGVYQEYITIPITLTHLTLIGDGPKKTIITGNKNFVDGIPTLQTATVAVTPEHFIARGIGFVNTAGAEKHQAVALRVQADKAIFYDCEMHGYQDTLYAHTMRQFYRDCTISGTIDFVFGDAATVFQNCNFLVRKPLPNQQNIVTAHGRKERRQPSALIIQGSTIKPDTDLMPVKDQFESYLGRPWKEYSRTIIMETYIDDFIQPQGWLPWTGDWGLKTCFYTEYNNYGPGSDKAQRARWRGIKTITPAHALDFTPGRFISGDRWIKSTGIPYAAGMTKGGAGTGH 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3273430 3275425 + Sed0005378.1 Sed04g0443 709046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0443 592 CDD PMEI-like_3 64 215 - -
Sed04g0443 592 Gene3D - 266 583 IPR012334 -
Sed04g0443 592 FunFam Pectinesterase 58 214 - -
Sed04g0443 592 Pfam Pectinesterase 272 569 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed04g0443 592 NCBIfam pectinesterase inhibitor domain 58 213 IPR006501 GO:0004857(InterPro)
Sed04g0443 592 SUPERFAMILY Pectin lyase-like 267 581 IPR011050 -
Sed04g0443 592 SMART PMEI_2 57 209 IPR006501 GO:0004857(InterPro)
Sed04g0443 592 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 214 IPR035513 -
Sed04g0443 592 ProSitePatterns Pectinesterase signature 2. 417 426 IPR033131 -
Sed04g0443 592 FunFam Pectinesterase 266 583 - -
Sed04g0443 592 Pfam Plant invertase/pectin methylesterase inhibitor 60 209 IPR006501 GO:0004857(InterPro)
Sed04g0443 592 Gene3D Invertase/pectin methylesterase inhibitor family protein 57 214 IPR035513 -
Sed04g0443 592 PANTHER PECTINESTERASE 14 574 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0443 Sed-Chr4:3273430 Sed04g3998 Sed-Chr4:47705999 1.30E-237 dispersed
Sed04g0442 Sed-Chr4:3267928 Sed04g0443 Sed-Chr4:3273430 1.10E-97 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0443 K01051 - csv:101207393 899.427