Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0475 ATGGCTGGTCGAGCTCCAATTCCCACCAAAAGCTCTGCGCTTATTTCTATGATTGCTGATGAGGATACGGTTGTTGGATTTCTGCTTGCTGGAGTTGGCAATGTTGACCTGCGAAGAAAAACTAATTACCTTATAGTGGACTCAAAGACAACTGTTAAACAAATTGAAGATGCTTTCAAAGAGTTCACTACAAGGGAGGATATTGCAATAGTGATGATTAGTCAATATGTTGCAAACATGATCAGGTTTTTGGTAGATAGCTATAACAAGCCAATTCCTGCAATATTGGAGATTCCTTCCAAGGACCATCCATATGACCCTGCTCACGATTCAATTCTTTCGCGAGTAAAGAACCTGTTTTCTACCGAATCCGTGGCGTCTGGGAGGCGTTGA 393 41.98 MAGRAPIPTKSSALISMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTVKQIEDAFKEFTTREDIAIVMISQYVANMIRFLVDSYNKPIPAILEIPSKDHPYDPAHDSILSRVKNLFSTESVASGRR 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3509941 3513826 + Sed0027410.1 Sed04g0475 709078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0475 130 PIRSF V-ATP_synth_F 5 123 IPR005772 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed04g0475 130 Pfam ATP synthase (F/14-kDa) subunit 15 116 IPR008218 GO:0034220(InterPro)|GO:0046961(InterPro)
Sed04g0475 130 Gene3D ATPase, V1 complex, subunit F 9 122 IPR036906 GO:0034220(InterPro)
Sed04g0475 130 SUPERFAMILY AtpF-like 15 118 IPR036906 GO:0034220(InterPro)
Sed04g0475 130 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT F 1 126 - GO:0016020(PANTHER)
Sed04g0475 130 FunFam V-type proton ATPase subunit F 9 122 - -
Sed04g0475 130 NCBIfam V-type ATPase subunit F 12 124 IPR005772 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0475 Sed-Chr4:3509941 Sed11g1588 Sed-Chr11:31397666 1.00E-65 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0475 K02151 - csv:101215239 246.128