Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0482 ATGGATCAGCAAGGGCATGGCCAGTCTCCATCCATGGGAGGAATTGGCAGTGGAGGTTCGATACCATATGGTAACAACCTCTACAATCCCAGCCAAATGACAGTCGGCCCGACTTCTGGATCTGTTGTTACATCGGTCGGAGGTATTCAGTCCATGGGTCAACCTGGTGGCGCTCAGCTGGCTGAACATCAACTTGCTTATCAGCATATCCACCAGCAGCAGCAGCAACAGCTTCAACAACAGCTCCAATTTTTTTGGGCAAATCAGTACCAAGAGATTGAGAAGGTAACAGACTTTAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCCGACGAGGATGTACGAATGATATCGGCTGAGGCACCAGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTTGAATTGACTTTACGGTCTTGGAATCATACCGAAGAGAACAAGCGCAGGACCCTTCAAAAGAATGATATTGCTGCAGCTATCACCAGAACTGACATTTTTGACTTTCTGGTTGATATTGTGCCAAGGGAGGATCTGAAAGACGAAGTACTCACGTCGATTCCTAGAGGATCAATTACGGTTGGAGGGCCTGGAGATGCACTTCCTTACTGCTATATGCCGCCTTCTCAACATGCACCTCAGGTCGGAGCACCCGGAATGATTATGGGTAAGCCCGTGATGGATCCGGCTATGTATGCTCAACAATCACACCCTTATATGCCTCCGCAAATGTGGCAGCAAACACAAGATCAAGCCCCTCCCGATCAATAG 786 47.71 MDQQGHGQSPSMGGIGSGGSIPYGNNLYNPSQMTVGPTSGSVVTSVGGIQSMGQPGGAQLAEHQLAYQHIHQQQQQQLQQQLQFFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSITVGGPGDALPYCYMPPSQHAPQVGAPGMIMGKPVMDPAMYAQQSHPYMPPQMWQQTQDQAPPDQ 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3547806 3551229 - Sed0013530.1 Sed04g0482 709085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0482 261 FunFam Nuclear transcription factor Y subunit gamma 68 181 - -
Sed04g0482 261 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982(InterPro)
Sed04g0482 261 Pfam Core histone H2A/H2B/H3/H4 73 166 IPR007125 GO:0003677(InterPro)
Sed04g0482 261 SUPERFAMILY Histone-fold 71 175 IPR009072 GO:0046982(InterPro)
Sed04g0482 261 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 83 192 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0482 Sed-Chr4:3547806 Sed04g0484 Sed-Chr4:3547806 8.40E-144 dispersed
Sed04g0482 Sed-Chr4:3547806 Sed04g0483 Sed-Chr4:3547806 8.40E-144 tandem
Sed10g1805 Sed-Chr10:35109340 Sed04g0482 Sed-Chr4:3547806 6.20E-62 transposed
Sed04g0482 Sed-Chr4:3547806 Sed04g3954 Sed-Chr4:47555262 6.90E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38039 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0482 K08066 - csv:101209664 410.994