Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0483 ATGGATCAGCAAGGGCATGGCCAGTCTCCATCCATGGGAGGAATTGGCAGTGGAGGTTCGATACCATATGGTAACAACCTCTACAATCCCAGCCAAATGACAGTCGGCCCGACTTCTGGATCTGTTGTTACATCGGTCGGAGGTATTCAGTCCATGGGTCAACCTGGTGGCGCTCAGCTGGCTGAACATCAACTTGCTTATCAGCATATCCACCAGCAGCAGCAGCAACAGCTTCAACAACAGCTCCAATTTTTTTGGGCAAATCAGTACCAAGAGATTGAGAAGGTAACAGACTTTAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCCGACGAGGATGTACGAATGATATCGGCTGAGGCACCAGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTTGAATTGACTTTACGGTCTTGGAATCATACCGAAGAGAACAAGCGCAGGACCCTTCAAAAGAATGATATTGCTGCAGCTATCACCAGAACTGACATTTTTGACTTTCTGGTTGATATTGTGCCAAGGGAGGATCTGAAAGACGAAGTACTCACGTCGATTCCTAGAGGATCAATTACGGTTGGAGGGCCTGGAGATGCACTTCCTTACTGCTATATGCCGCCTTCTCAACATGCACCTCAGGTCGGAGCACCCGGAATGATTATGGGTAAGCCCGTGATGGATCCGGCTATGTATGCTCAACAATCACACCCTTATATGCCTCCGCAAATGTGGCAGCAAACACAAGATCAAGCCCCTCCCGATCAATAG 786 47.71 MDQQGHGQSPSMGGIGSGGSIPYGNNLYNPSQMTVGPTSGSVVTSVGGIQSMGQPGGAQLAEHQLAYQHIHQQQQQQLQQQLQFFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSITVGGPGDALPYCYMPPSQHAPQVGAPGMIMGKPVMDPAMYAQQSHPYMPPQMWQQTQDQAPPDQ 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3547806 3551229 - Sed0013530.2 Sed04g0483 709086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0483 261 FunFam Nuclear transcription factor Y subunit gamma 68 181 - -
Sed04g0483 261 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982(InterPro)
Sed04g0483 261 Pfam Core histone H2A/H2B/H3/H4 73 166 IPR007125 GO:0003677(InterPro)
Sed04g0483 261 SUPERFAMILY Histone-fold 71 175 IPR009072 GO:0046982(InterPro)
Sed04g0483 261 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 83 192 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0483 K08066 - - csv:101209664 410.994
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0483 Sed-Chr4:3547806 Sed04g0485 Sed-Chr4:3547806 8.40E-144 dispersed
Sed04g0482 Sed-Chr4:3547806 Sed04g0483 Sed-Chr4:3547806 8.40E-144 tandem
Sed04g0483 Sed-Chr4:3547806 Sed04g0484 Sed-Chr4:3547806 8.40E-144 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g2510 . 90 267 CCAAT-HAP5 Transcription Factor Family AT3G48590 84.0 1.3e-82 303.9
Sed08g0028 . 33 217 CCAAT-HAP5 Transcription Factor Family AT3G48590 81.7 2.6e-80 296.2
Sed04g0484 . 82 253 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 1.6e-53 207.2
Sed04g0485 . 82 253 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 1.6e-53 207.2
Sed04g0482 . 82 253 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 1.6e-53 207.2
Sed04g0483 . 82 253 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 1.6e-53 207.2
Sed04g3954 . 82 252 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.5 2.1e-53 206.8
Sed04g3955 . 82 252 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.5 2.1e-53 206.8
Sed04g3956 . 82 252 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.5 2.1e-53 206.8
Sed04g3957 . 82 252 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.5 2.1e-53 206.8
Sed10g1805 . 80 223 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 3.6e-53 206.1
Sed06g0320 . 69 233 CCAAT-HAP5 Transcription Factor Family AT3G48590 60.5 8.3e-50 194.9
Sed06g0321 . 69 233 CCAAT-HAP5 Transcription Factor Family AT3G48590 60.5 8.3e-50 194.9
Sed06g0322 . 69 233 CCAAT-HAP5 Transcription Factor Family AT3G48590 60.5 8.3e-50 194.9
Sed06g0323 . 69 233 CCAAT-HAP5 Transcription Factor Family AT3G48590 60.5 8.3e-50 194.9
Sed06g0324 . 69 233 CCAAT-HAP5 Transcription Factor Family AT3G48590 60.5 8.3e-50 194.9
Sed06g0325 . 69 233 CCAAT-HAP5 Transcription Factor Family AT3G48590 60.5 8.3e-50 194.9
Sed06g0326 . 69 233 CCAAT-HAP5 Transcription Factor Family AT3G48590 60.5 8.3e-50 194.9
Sed06g0327 . 69 233 CCAAT-HAP5 Transcription Factor Family AT3G48590 60.5 8.3e-50 194.9
Sed04g3954 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-56 214.9
Sed04g3955 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-56 214.9
Sed04g3956 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-56 214.9
Sed04g3957 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-56 214.9
Sed04g0484 . 1 261 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.7 8.5e-55 211.5
Sed04g0485 . 1 261 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.7 8.5e-55 211.5
Sed04g0482 . 1 261 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.7 8.5e-55 211.5
Sed04g0483 . 1 261 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.7 8.5e-55 211.5
Sed06g0320 . 1 167 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.9 8.2e-50 194.9
Sed06g0321 . 1 167 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.9 8.2e-50 194.9
Sed06g0322 . 1 167 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.9 8.2e-50 194.9
Sed06g0323 . 1 167 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.9 8.2e-50 194.9
Sed06g0324 . 1 167 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.9 8.2e-50 194.9
Sed06g0325 . 1 167 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.9 8.2e-50 194.9
Sed06g0326 . 1 167 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.9 8.2e-50 194.9
Sed06g0327 . 1 167 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.9 8.2e-50 194.9
Sed10g1805 . 26 178 CCAAT-HAP5 Transcription Factor Family AT1G08970 69.3 7.7e-48 188.3
Sed08g0028 . 29 131 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.5 2.0e-43 173.7
Sed12g2510 . 90 188 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.8e-42 169.9
Sed04g3954 . 23 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.4 1.4e-62 237.3
Sed04g3955 . 23 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.4 1.4e-62 237.3
Sed04g3956 . 23 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.4 1.4e-62 237.3
Sed04g3957 . 23 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.4 1.4e-62 237.3
Sed04g0484 . 16 252 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 1.5e-61 233.8
Sed04g0485 . 16 252 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 1.5e-61 233.8
Sed04g0482 . 16 252 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 1.5e-61 233.8
Sed04g0483 . 16 252 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 1.5e-61 233.8
Sed06g0320 . 19 198 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.2 1.8e-51 200.3
Sed06g0321 . 19 198 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.2 1.8e-51 200.3
Sed06g0322 . 19 198 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.2 1.8e-51 200.3
Sed06g0323 . 19 198 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.2 1.8e-51 200.3
Sed06g0324 . 19 198 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.2 1.8e-51 200.3
Sed06g0325 . 19 198 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.2 1.8e-51 200.3
Sed06g0326 . 19 198 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.2 1.8e-51 200.3
Sed06g0327 . 19 198 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.2 1.8e-51 200.3
Sed10g1805 . 80 222 CCAAT-HAP5 Transcription Factor Family AT1G54830 68.8 2.6e-50 196.4
Sed12g2510 . 90 244 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 5.9e-50 195.3
Sed08g0028 . 29 170 CCAAT-HAP5 Transcription Factor Family AT1G54830 68.8 1.1e-48 191.0
Sed12g2510 . 90 259 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.3 3.3e-39 159.5
Sed08g0028 . 32 190 CCAAT-HAP5 Transcription Factor Family AT5G50480 53.9 2.4e-37 153.3
Sed12g2510 . 90 267 CCAAT-HAP5 Transcription Factor Family AT5G63470 79.1 1.9e-76 283.5
Sed08g0028 . 33 217 CCAAT-HAP5 Transcription Factor Family AT5G63470 75.8 2.6e-73 273.1
Sed04g3954 . 82 252 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.0 1.4e-50 197.6
Sed04g3955 . 82 252 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.0 1.4e-50 197.6
Sed04g3956 . 82 252 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.0 1.4e-50 197.6
Sed04g3957 . 82 252 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.0 1.4e-50 197.6
Sed04g0484 . 82 251 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.4 8.9e-50 194.9
Sed04g0485 . 82 251 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.4 8.9e-50 194.9
Sed04g0482 . 82 251 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.4 8.9e-50 194.9
Sed04g0483 . 82 251 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.4 8.9e-50 194.9
Sed10g1805 . 80 231 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 1.5e-49 194.1
Sed06g0320 . 69 212 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.2 9.2e-47 184.9
Sed06g0321 . 69 212 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.2 9.2e-47 184.9
Sed06g0322 . 69 212 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.2 9.2e-47 184.9
Sed06g0323 . 69 212 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.2 9.2e-47 184.9
Sed06g0324 . 69 212 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.2 9.2e-47 184.9
Sed06g0325 . 69 212 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.2 9.2e-47 184.9
Sed06g0326 . 69 212 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.2 9.2e-47 184.9
Sed06g0327 . 69 212 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.2 9.2e-47 184.9
Sed10g1805 . 44 211 CCAAT-HAP5 Transcription Factor Family AT1G56170 79.9 4.3e-63 238.8
Sed06g0320 . 37 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 75.1 3.6e-62 235.7
Sed06g0321 . 37 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 75.1 3.6e-62 235.7
Sed06g0322 . 37 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 75.1 3.6e-62 235.7
Sed06g0323 . 37 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 75.1 3.6e-62 235.7
Sed06g0324 . 37 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 75.1 3.6e-62 235.7
Sed06g0325 . 37 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 75.1 3.6e-62 235.7
Sed06g0326 . 37 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 75.1 3.6e-62 235.7
Sed06g0327 . 37 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 75.1 3.6e-62 235.7
Sed04g0484 . 54 219 CCAAT-HAP5 Transcription Factor Family AT1G56170 68.4 8.3e-51 198.0
Sed04g0485 . 54 219 CCAAT-HAP5 Transcription Factor Family AT1G56170 68.4 8.3e-51 198.0
Sed04g0482 . 54 219 CCAAT-HAP5 Transcription Factor Family AT1G56170 68.4 8.3e-51 198.0
Sed04g0483 . 54 219 CCAAT-HAP5 Transcription Factor Family AT1G56170 68.4 8.3e-51 198.0
Sed04g3954 . 82 211 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.2 3.5e-49 192.6
Sed04g3955 . 82 211 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.2 3.5e-49 192.6
Sed04g3956 . 82 211 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.2 3.5e-49 192.6
Sed04g3957 . 82 211 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.2 3.5e-49 192.6
Sed08g0028 . 33 156 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 1.3e-48 190.7
Sed12g2510 . 90 212 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.6 1.7e-48 190.3
Sed04g2683 . 1 281 CCAAT-HAP5 Transcription Factor Family AT3G12480 53.9 4.8e-63 239.2
Sed07g2345 . 1 284 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.1 3.2e-59 226.5
Sed07g2346 . 1 283 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.8 3.0e-57 219.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38040 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Sed TF