Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0486 ATGGCAATCAATTCCCCCTTTCTCAAATCTTCCGTTCTTTCCCTCACAATCCTCTCCGTTTTCATCTTCTTCATCCTCAATCGCTCGCCGAAATCCGCTTCCCGGAGGTCCCTCATCGCCGTCGGCGGCTCCGATTCCACTTCCGGCGCCGTTTCTCCGACCCCATCTTGTTCCTCCCTCGAATCTCACTCCGATGGCCTCGTTAACTACTCCTATTTCCATCTCTGCTTCTTCGACCAAAACCCATCTCTCTCCGTTCCGTTTCTGACTCTAATCCTTCTGATCCACTTCTACATCCTCATCAAAACCGCTCAGGATCACTTCTCCATTGTCACTTCCAAGCTCGCTTTTCACCTCAACTTGTCTCCGAGCATGGCGGCCGTTACGCTCTTGGCTTTGGGCAATGGCGCTCCCGATGTGTTTGCGTCGGTTGCTGCGGTTCGCGGCGGGCAGTACCGGACCGGGTTCGGTGCGATTCTCTCTGCCGGGACGTTCGTTTCGGCCTTTGTGGTTGGGTTTGTGGCCATTTATGCTGCGCCGTTCTCGGTGAATCCGGCTCAGTTTGTGAGGGATGTGTTGTTTTATTTGACTGCGGCGTTTTTCTTGTTCTATGTGTATCTTAGTGCCGAGATATTTCTGTGGCAGGCTGTTGGGTTTGTTGGGTTTTATCTGTTTTTTGTTGGGTTTGTGTTTTGGATGGATTTGAGAATGGGGAGTGAGAGAGTTAAGAGTGGGACTGATGTGGGAGTTGCTAGAGAAGTTGAGGTTTACCATGGTGTTGTGCCTCATGACTGTGAGATTGGAGAAGGCTACAGAAATGTGGGTGAAGGAAAAACCAGTTTTGGGTTTTTTGAAGCTCTTGGAATGATCCCAAAAGCATGGGAGGTTCCTGTCTCCTTTCTTCTGAAGCTCACCATTCCCCAACCCGCACCTTCTGAATGGAGCAGATTCTTTACATCAGCGAATATTTCTCTTTGTCCTGTTGCTCTTCTGTATGCCTGTAACTCGTTCATTCCTTTTAACCATCCCATTGCCTTCCTCTTACCGCATACGCATTTACCTCTTTGGTTTGTAGTACTCTTAGCGAGCTCTTCTCTTGCAATTCTTCACTTTGTCATTGAAACCGAGCCCCCCAAAACCGAACAAGTCCCTATGGTGCTAGCAGCATTTATCATGAGTGTATTTTGGATTTCGACCACTGCTGGAGAACTGCTGAACTGTCTTGCAGCTCTGGGGGTGCTTCTCAAACTCCCGCCAGCCCTACTCGGGCTCACGGTCCTTGCCTGGGGAAATTCGGTTGGGGATCTTGTGGCTGATGTTGCTCTTGCAAAAGCAGGCCAGCCCTTGCTGGCCATGGCTGGATGCTTTGCAGGGCCAATGTTTAACATGTTGGTTGGGCTTGGAACAGCTTTGGTTATACAAACAGCTAACAATTATCCGGAGGCCTATCAGCTTCAATTTCATACCGGAATTGTGATTGCATTCGTGTTCTTACTTTTCAGCCTGATGGGTTCTCTACTTGTAGTTATTTGGTGCAGATTTCGGGTGCCTCGATTTTGGGGATTCTGCCTTGTTGTGATCTACATTGTTTTCATGGTTACCAGCTTAGTGATGGCCAAGTTTTCTCCATGA 1632 48.9 MAINSPFLKSSVLSLTILSVFIFFILNRSPKSASRRSLIAVGGSDSTSGAVSPTPSCSSLESHSDGLVNYSYFHLCFFDQNPSLSVPFLTLILLIHFYILIKTAQDHFSIVTSKLAFHLNLSPSMAAVTLLALGNGAPDVFASVAAVRGGQYRTGFGAILSAGTFVSAFVVGFVAIYAAPFSVNPAQFVRDVLFYLTAAFFLFYVYLSAEIFLWQAVGFVGFYLFFVGFVFWMDLRMGSERVKSGTDVGVAREVEVYHGVVPHDCEIGEGYRNVGEGKTSFGFFEALGMIPKAWEVPVSFLLKLTIPQPAPSEWSRFFTSANISLCPVALLYACNSFIPFNHPIAFLLPHTHLPLWFVVLLASSSLAILHFVIETEPPKTEQVPMVLAAFIMSVFWISTTAGELLNCLAALGVLLKLPPALLGLTVLAWGNSVGDLVADVALAKAGQPLLAMAGCFAGPMFNMLVGLGTALVIQTANNYPEAYQLQFHTGIVIAFVFLLFSLMGSLLVVIWCRFRVPRFWGFCLVVIYIVFMVTSLVMAKFSP 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3557061 3563450 - Sed0012937.1 Sed04g0486 709089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0486 543 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 61 540 IPR051359 GO:0006812(PANTHER)|GO:0008324(PANTHER)|GO:0016020(PANTHER)
Sed04g0486 543 Pfam Sodium/calcium exchanger protein 387 536 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g0486 543 Pfam Sodium/calcium exchanger protein 91 232 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed04g0486 543 Gene3D - 319 537 IPR044880 -
Sed04g0486 543 Gene3D - 121 254 IPR044880 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0486 Sed-Chr4:3557061 Sed12g1116 Sed-Chr12:7313375 5.20E-47 dispersed
Sed04g0486 Sed-Chr4:3557061 Sed02g0838 Sed-Chr2:46008064 8.60E-50 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0486 K13754 - csv:101209909 885.174