Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0491 ATGGCATCTTCTCCTTTCAGCGGCGATGAAACTGCTCCGTTCTTCGGCTTCCTCGGAGCCGCGGCCGCTCTCGTTTTCTCCTGCATGGGTGCTGCTTATGGGACTGCAAAGAGTGGAGTTGGAGTGGCCTCCATGGGAGTTATGAGGCCAGAGCTTGTCATGAAATCTATAGTTCCTGTTGTTATGGCTGGAGTGTTGGGTATTTATGGGTTGATCATCGCTGTTATTATTAGTACCGGAATAAACCCGAAAGCAAAGTCTTACTATTTGTTTGATGGGTATGCCCATCTTTCTTCTGGACTTGCTTGTGGACTTGCTGGTCTTTCTGCTGGAATGGCAATTGGGGTTGTTGGTGATGCTGGTGTTCGGGCCAACGCACAACAGCCTAAGCTGTTTGTTGGAATGATTCTCATCCTCATCTTTGCCGAAGCTCTTGCACTCTACGGTCTTATTGTCGGTATCATTCTCTCGTCTCGGGCGGGCCAATCCCGCGCCGAATAA 501 49.7 MASSPFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGVVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3615657 3618928 - Sed0008499.1 Sed04g0491 709094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0491 166 CDD ATP-synt_Vo_c_ATP6C_rpt1 14 81 - -
Sed04g0491 166 FunFam V-type proton ATPase proteolipid subunit 12 163 - -
Sed04g0491 166 SUPERFAMILY F1F0 ATP synthase subunit C 15 78 IPR035921 -
Sed04g0491 166 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 5 160 - GO:0016021(PANTHER)
Sed04g0491 166 Gene3D - 12 163 IPR035921 -
Sed04g0491 166 Pfam ATP synthase subunit C 18 77 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Sed04g0491 166 Pfam ATP synthase subunit C 98 156 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Sed04g0491 166 PRINTS Vacuolar ATP synthase 16kDa subunit signature 31 55 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed04g0491 166 PRINTS Vacuolar ATP synthase 16kDa subunit signature 57 81 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed04g0491 166 PRINTS Vacuolar ATP synthase 16kDa subunit signature 108 134 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed04g0491 166 PRINTS Vacuolar ATP synthase 16kDa subunit signature 135 158 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed04g0491 166 NCBIfam V-type ATPase subunit C 14 122 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed04g0491 166 CDD ATP-synt_Vo_c_ATP6C_rpt2 90 157 - -
Sed04g0491 166 SUPERFAMILY F1F0 ATP synthase subunit C 88 157 IPR035921 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1705 Sed-Chr3:11103752 Sed04g0491 Sed-Chr4:3615657 4.00E-75 dispersed
Sed04g0491 Sed-Chr4:3615657 Sed11g1075 Sed-Chr11:26215734 1.20E-74 dispersed
Sed04g0491 Sed-Chr4:3615657 Sed03g1704 Sed-Chr3:11099262 1.20E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0491 K02155 - ath:AT1G75630 286.96