Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0496 ATGATTGAGAGTAAACTTTATTTTGCTTCTGGTCCCTCTAAAATTTCCTTGACTGATAATGAGTCAAATGTGGAAGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCTAAAGAAATCCAAGTTCACCATGACAGTAAAGCCACTGCAACTCTAGAATCAGAGACCGAGTTCTCTCGAGATGCACGAGTCATCCGTGAGAGAGTGCTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGACTGCTGGGGGTGAAAATTTGTATAAAGGGGTCAATTCGTATGTGGATTACAAGGCTGGATTCAGAAGGGAGCATACAATTTCAAGTGAAAAAGCTGGTGGGTCTCATGGGCCACTTCGAGCTTCTGCTCATATAAGAACTTCAACAAGACTTGATTATCAGCGTGATATTTGCAAGGATTATAAGGAGACTGGTTACTGTGGTTATGGAGATGCTTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGTTGGCGGTTGGAAGAGGAATGGGAGGAAGTTGAGAAATCAAGGAAGAGAAAATTAGCTATGGGATCTAATGATGGTGTTGAAGATGCTGCAGAACAGGGTGATGAAGAGGATGAAGATGCATTGCCATTCGCTTGTTATATTTGTTGTGAGCCATTTGTGGATCCTGTTGTGACTAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGAAATGCTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGGTCACGAGATCAGGAAAAAGATGGCACAGAGTAAATAA 798 41.85 MIESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALKKCFVCNQPTLGIFNTGHEIRKKMAQSK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3659221 3661870 + Sed0000777.1 Sed04g0496 709099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0496 265 Gene3D - 128 165 - -
Sed04g0496 265 ProSiteProfiles Zinc finger RING-type profile. 212 243 IPR001841 -
Sed04g0496 265 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 160 IPR000571 GO:0046872(InterPro)
Sed04g0496 265 SUPERFAMILY RING/U-box 211 248 - -
Sed04g0496 265 PANTHER ZINC FINGER PROTEIN 183 3 264 IPR039971 GO:0005684(PANTHER)|GO:0034247(PANTHER)
Sed04g0496 265 SUPERFAMILY CCCH zinc finger 132 165 IPR036855 GO:0046872(InterPro)
Sed04g0496 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 263 IPR013083 -
Sed04g0496 265 SMART c3hfinal6 134 161 IPR000571 GO:0046872(InterPro)
Sed04g0496 265 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872(InterPro)
Sed04g0496 265 CDD RING-HC_RNF113A_B 205 252 - -
Sed04g0496 265 ProSitePatterns Zinc finger RING-type signature. 227 236 IPR017907 -
Sed04g0496 265 SMART ring_2 212 243 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0496 Sed-Chr4:3659221 Sed04g0498 Sed-Chr4:3659221 6.90E-154 dispersed
Sed04g0496 Sed-Chr4:3659221 Sed04g0497 Sed-Chr4:3659221 1.00E-136 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38043 PF00642 zf-CCCH 2.90E-10 CL0537 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0496 K13127 - csv:101221334 462.996