Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0496 | ATGATTGAGAGTAAACTTTATTTTGCTTCTGGTCCCTCTAAAATTTCCTTGACTGATAATGAGTCAAATGTGGAAGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCTAAAGAAATCCAAGTTCACCATGACAGTAAAGCCACTGCAACTCTAGAATCAGAGACCGAGTTCTCTCGAGATGCACGAGTCATCCGTGAGAGAGTGCTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGACTGCTGGGGGTGAAAATTTGTATAAAGGGGTCAATTCGTATGTGGATTACAAGGCTGGATTCAGAAGGGAGCATACAATTTCAAGTGAAAAAGCTGGTGGGTCTCATGGGCCACTTCGAGCTTCTGCTCATATAAGAACTTCAACAAGACTTGATTATCAGCGTGATATTTGCAAGGATTATAAGGAGACTGGTTACTGTGGTTATGGAGATGCTTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGTTGGCGGTTGGAAGAGGAATGGGAGGAAGTTGAGAAATCAAGGAAGAGAAAATTAGCTATGGGATCTAATGATGGTGTTGAAGATGCTGCAGAACAGGGTGATGAAGAGGATGAAGATGCATTGCCATTCGCTTGTTATATTTGTTGTGAGCCATTTGTGGATCCTGTTGTGACTAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGAAATGCTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGGTCACGAGATCAGGAAAAAGATGGCACAGAGTAAATAA | 798 | 41.85 | MIESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALKKCFVCNQPTLGIFNTGHEIRKKMAQSK | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3659221 | 3661870 | + | Sed0000777.1 | Sed04g0496 | 709099 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0496 | 265 | Gene3D | - | 128 | 165 | - | - | |
Sed04g0496 | 265 | ProSiteProfiles | Zinc finger RING-type profile. | 212 | 243 | IPR001841 | - | |
Sed04g0496 | 265 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 135 | 160 | IPR000571 | GO:0046872(InterPro) | |
Sed04g0496 | 265 | SUPERFAMILY | RING/U-box | 211 | 248 | - | - | |
Sed04g0496 | 265 | PANTHER | ZINC FINGER PROTEIN 183 | 3 | 264 | IPR039971 | GO:0005684(PANTHER)|GO:0034247(PANTHER) | |
Sed04g0496 | 265 | SUPERFAMILY | CCCH zinc finger | 132 | 165 | IPR036855 | GO:0046872(InterPro) | |
Sed04g0496 | 265 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 166 | 263 | IPR013083 | - | |
Sed04g0496 | 265 | SMART | c3hfinal6 | 134 | 161 | IPR000571 | GO:0046872(InterPro) | |
Sed04g0496 | 265 | ProSiteProfiles | Zinc finger C3H1-type profile. | 134 | 162 | IPR000571 | GO:0046872(InterPro) | |
Sed04g0496 | 265 | CDD | RING-HC_RNF113A_B | 205 | 252 | - | - | |
Sed04g0496 | 265 | ProSitePatterns | Zinc finger RING-type signature. | 227 | 236 | IPR017907 | - | |
Sed04g0496 | 265 | SMART | ring_2 | 212 | 243 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0496 | Sed-Chr4:3659221 | Sed04g0498 | Sed-Chr4:3659221 | 6.90E-154 | dispersed | |
Sed04g0496 | Sed-Chr4:3659221 | Sed04g0497 | Sed-Chr4:3659221 | 1.00E-136 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38043 | PF00642 | zf-CCCH | 2.90E-10 | CL0537 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0496 | K13127 | - | csv:101221334 | 462.996 |