Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0497 ATGATTGAGAGTAAACTTTATTTTGCTTCTGGTCCCTCTAAAATTTCCTTGACTGATAATGAGTCAAATGTGGAAGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCTAAAGAAATCCAAGTTCACCATGACAGTAAAGCCACTGCAACTCTAGAATCAGAGACCGAGTTCTCTCGAGATGCACGAGTCATCCGTGAGAGAGTGCTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGACTGCTGGGGGTGAAAATTTGTATAAAGGGGTCAATTCGTATGTGGATTACAAGGCTGGATTCAGAAGGGAGCATACAATTTCAAGTGAAAAAGCTGGTGGGTCTCATGGGCCACTTCGAGCTTCTGCTCATATAAGAACTTCAACAAGACTTGATTATCAGCGTGATATTTGCAAGGATTATAAGGAGACTGGTTACTGTGGTTATGGAGATGCTTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGTTGGCGGTTGGAAGAGGAATGGGAGGAAGTTGAGAAATCAAGGAAGAGAAAATTAGCTATGGGATCTAATGATGGTGTTGAAGATGCTGCAGAACAGGGTGATGAAGAGGATGAAGATGCATTGCCATTCGCTTGTTATATTTGTTGTGAGCCATTTGTGGATCCTGTTGTGACTAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGGTAATATCTATTTCCGGTCTTAATTAA 741 41.3 MIESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALKVISISGLN 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3659221 3661870 + Sed0000777.2 Sed04g0497 709100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0497 246 SUPERFAMILY RING/U-box 211 243 - -
Sed04g0497 246 CDD RING-HC_RNF113A_B 205 239 - -
Sed04g0497 246 Gene3D - 128 165 - -
Sed04g0497 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 244 IPR013083 -
Sed04g0497 246 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 160 IPR000571 GO:0046872(InterPro)
Sed04g0497 246 SUPERFAMILY CCCH zinc finger 132 165 IPR036855 GO:0046872(InterPro)
Sed04g0497 246 PANTHER ZINC FINGER PROTEIN 183 3 239 IPR039971 GO:0005684(PANTHER)|GO:0034247(PANTHER)
Sed04g0497 246 SMART c3hfinal6 134 161 IPR000571 GO:0046872(InterPro)
Sed04g0497 246 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872(InterPro)
Sed04g0497 246 Pfam Zinc finger, C3HC4 type (RING finger) 212 241 IPR018957 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0497 Sed-Chr4:3659221 Sed04g0499 Sed-Chr4:3659221 2.80E-141 dispersed
Sed04g0496 Sed-Chr4:3659221 Sed04g0497 Sed-Chr4:3659221 1.00E-136 tandem
Sed04g0497 Sed-Chr4:3659221 Sed04g0498 Sed-Chr4:3659221 7.20E-137 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38044 PF00097 zf-C3HC4 1.30E-05 CL0229 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0497 K13127 - csv:101221334 416.001