Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0498 | ATGACAGATACAACTGAAAATCAGCACACCAAACAAGCCTGTAGATTTTTCAGAAAACCAACAAAGAACAAAAACATCAGCAAGCGGATTATTGATGAAAACGAAGACTATGATTCTAAAACCGAGACTTGGTTTTTTTCAAACCAGAAAAAACCCACCATGATTGAGAGTAAACTTTATTTTGCTTCTGGTCCCTCTAAAATTTCCTTGACTGATAATGAGTCAAATGTGGAAGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCTAAAGAAATCCAAGTTCACCATGACAGTAAAGCCACTGCAACTCTAGAATCAGAGACCGAGTTCTCTCGAGATGCACGAGTCATCCGTGAGAGAGTGCTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGACTGCTGGGGGTGAAAATTTGTATAAAGGGGTCAATTCGTATGTGGATTACAAGGCTGGATTCAGAAGGGAGCATACAATTTCAAGTGAAAAAGCTGGTGGGTCTCATGGGCCACTTCGAGCTTCTGCTCATATAAGAACTTCAACAAGACTTGATTATCAGCGTGATATTTGCAAGGATTATAAGGAGACTGGTTACTGTGGTTATGGAGATGCTTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGTTGGCGGTTGGAAGAGGAATGGGAGGAAGTTGAGAAATCAAGGAAGAGAAAATTAGCTATGGGATCTAATGATGGTGTTGAAGATGCTGCAGAACAGGGTGATGAAGAGGATGAAGATGCATTGCCATTCGCTTGTTATATTTGTTGTGAGCCATTTGTGGATCCTGTTGTGACTAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGAAATGCTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGGTCACGAGATCAGGAAAAAGATGGCACAGAGTAAATAA | 957 | 40.86 | MTDTTENQHTKQACRFFRKPTKNKNISKRIIDENEDYDSKTETWFFSNQKKPTMIESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALKKCFVCNQPTLGIFNTGHEIRKKMAQSK | 318 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3659221 | 3661870 | + | Sed0000777.3 | Sed04g0498 | 709101 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0498 | 318 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 219 | 316 | IPR013083 | - | |
Sed04g0498 | 318 | PANTHER | ZINC FINGER PROTEIN 183 | 13 | 317 | IPR039971 | GO:0005684(PANTHER)|GO:0034247(PANTHER) | |
Sed04g0498 | 318 | SMART | c3hfinal6 | 187 | 214 | IPR000571 | GO:0046872(InterPro) | |
Sed04g0498 | 318 | ProSitePatterns | Zinc finger RING-type signature. | 280 | 289 | IPR017907 | - | |
Sed04g0498 | 318 | SMART | ring_2 | 265 | 296 | IPR001841 | - | |
Sed04g0498 | 318 | ProSiteProfiles | Zinc finger C3H1-type profile. | 187 | 215 | IPR000571 | GO:0046872(InterPro) | |
Sed04g0498 | 318 | SUPERFAMILY | RING/U-box | 264 | 301 | - | - | |
Sed04g0498 | 318 | ProSiteProfiles | Zinc finger RING-type profile. | 265 | 296 | IPR001841 | - | |
Sed04g0498 | 318 | SUPERFAMILY | CCCH zinc finger | 185 | 218 | IPR036855 | GO:0046872(InterPro) | |
Sed04g0498 | 318 | CDD | RING-HC_RNF113A_B | 258 | 305 | - | - | |
Sed04g0498 | 318 | Gene3D | - | 181 | 218 | - | - | |
Sed04g0498 | 318 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 188 | 213 | IPR000571 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0496 | Sed-Chr4:3659221 | Sed04g0498 | Sed-Chr4:3659221 | 6.90E-154 | dispersed | |
Sed04g0498 | Sed-Chr4:3659221 | Sed11g0844 | Sed-Chr11:19390483 | 1.40E-145 | dispersed | |
Sed04g0497 | Sed-Chr4:3659221 | Sed04g0498 | Sed-Chr4:3659221 | 7.20E-137 | tandem | |
Sed04g0498 | Sed-Chr4:3659221 | Sed04g0499 | Sed-Chr4:3659221 | 3.20E-169 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38045 | PF00642 | zf-CCCH | 3.70E-10 | CL0537 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0498 | K13127 | - | csv:101221334 | 528.48 |