Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0498 ATGACAGATACAACTGAAAATCAGCACACCAAACAAGCCTGTAGATTTTTCAGAAAACCAACAAAGAACAAAAACATCAGCAAGCGGATTATTGATGAAAACGAAGACTATGATTCTAAAACCGAGACTTGGTTTTTTTCAAACCAGAAAAAACCCACCATGATTGAGAGTAAACTTTATTTTGCTTCTGGTCCCTCTAAAATTTCCTTGACTGATAATGAGTCAAATGTGGAAGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCTAAAGAAATCCAAGTTCACCATGACAGTAAAGCCACTGCAACTCTAGAATCAGAGACCGAGTTCTCTCGAGATGCACGAGTCATCCGTGAGAGAGTGCTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGACTGCTGGGGGTGAAAATTTGTATAAAGGGGTCAATTCGTATGTGGATTACAAGGCTGGATTCAGAAGGGAGCATACAATTTCAAGTGAAAAAGCTGGTGGGTCTCATGGGCCACTTCGAGCTTCTGCTCATATAAGAACTTCAACAAGACTTGATTATCAGCGTGATATTTGCAAGGATTATAAGGAGACTGGTTACTGTGGTTATGGAGATGCTTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGTTGGCGGTTGGAAGAGGAATGGGAGGAAGTTGAGAAATCAAGGAAGAGAAAATTAGCTATGGGATCTAATGATGGTGTTGAAGATGCTGCAGAACAGGGTGATGAAGAGGATGAAGATGCATTGCCATTCGCTTGTTATATTTGTTGTGAGCCATTTGTGGATCCTGTTGTGACTAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGAAATGCTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGGTCACGAGATCAGGAAAAAGATGGCACAGAGTAAATAA 957 40.86 MTDTTENQHTKQACRFFRKPTKNKNISKRIIDENEDYDSKTETWFFSNQKKPTMIESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALKKCFVCNQPTLGIFNTGHEIRKKMAQSK 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3659221 3661870 + Sed0000777.3 Sed04g0498 709101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0498 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 316 IPR013083 -
Sed04g0498 318 PANTHER ZINC FINGER PROTEIN 183 13 317 IPR039971 GO:0005684(PANTHER)|GO:0034247(PANTHER)
Sed04g0498 318 SMART c3hfinal6 187 214 IPR000571 GO:0046872(InterPro)
Sed04g0498 318 ProSitePatterns Zinc finger RING-type signature. 280 289 IPR017907 -
Sed04g0498 318 SMART ring_2 265 296 IPR001841 -
Sed04g0498 318 ProSiteProfiles Zinc finger C3H1-type profile. 187 215 IPR000571 GO:0046872(InterPro)
Sed04g0498 318 SUPERFAMILY RING/U-box 264 301 - -
Sed04g0498 318 ProSiteProfiles Zinc finger RING-type profile. 265 296 IPR001841 -
Sed04g0498 318 SUPERFAMILY CCCH zinc finger 185 218 IPR036855 GO:0046872(InterPro)
Sed04g0498 318 CDD RING-HC_RNF113A_B 258 305 - -
Sed04g0498 318 Gene3D - 181 218 - -
Sed04g0498 318 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 213 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0496 Sed-Chr4:3659221 Sed04g0498 Sed-Chr4:3659221 6.90E-154 dispersed
Sed04g0498 Sed-Chr4:3659221 Sed11g0844 Sed-Chr11:19390483 1.40E-145 dispersed
Sed04g0497 Sed-Chr4:3659221 Sed04g0498 Sed-Chr4:3659221 7.20E-137 tandem
Sed04g0498 Sed-Chr4:3659221 Sed04g0499 Sed-Chr4:3659221 3.20E-169 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38045 PF00642 zf-CCCH 3.70E-10 CL0537 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0498 K13127 - csv:101221334 528.48