Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0499 ATGACAGATACAACTGAAAATCAGCACACCAAACAAGCCTGTAGATTTTTCAGAAAACCAACAAAGAACAAAAACATCAGCAAGCGGATTATTGATGAAAACGAAGACTATGATTCTAAAACCGAGACTTGGTTTTTTTCAAACCAGAAAAAACCCACCATGATTGAGAGTAAACTTTATTTTGCTTCTGGTCCCTCTAAAATTTCCTTGACTGATAATGAGTCAAATGTGGAAGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCTAAAGAAATCCAAGTTCACCATGACAGTAAAGCCACTGCAACTCTAGAATCAGAGACCGAGTTCTCTCGAGATGCACGAGTCATCCGTGAGAGAGTGCTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGACTGCTGGGGGTGAAAATTTGTATAAAGGGGTCAATTCGTATGTGGATTACAAGGCTGGATTCAGAAGGGAGCATACAATTTCAAGTGAAAAAGCTGGTGGGTCTCATGGGCCACTTCGAGCTTCTGCTCATATAAGAACTTCAACAAGACTTGATTATCAGCGTGATATTTGCAAGGATTATAAGGAGACTGGTTACTGTGGTTATGGAGATGCTTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGTTGGCGGTTGGAAGAGGAATGGGAGGAAGTTGAGAAATCAAGGAAGAGAAAATTAGCTATGGGATCTAATGATGGTGTTGAAGATGCTGCAGAACAGGGTGATGAAGAGGATGAAGATGCATTGCCATTCGCTTGTTATATTTGTTGTGAGCCATTTGTGGATCCTGTTGTGACTAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGGTAATATCTATTTCCGGTCTTAATTAA 900 40.33 MTDTTENQHTKQACRFFRKPTKNKNISKRIIDENEDYDSKTETWFFSNQKKPTMIESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALKVISISGLN 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3659221 3661870 + Sed0000777.4 Sed04g0499 709102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0499 299 SMART c3hfinal6 187 214 IPR000571 GO:0046872(InterPro)
Sed04g0499 299 CDD RING-HC_RNF113A_B 258 292 - -
Sed04g0499 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 297 IPR013083 -
Sed04g0499 299 Pfam Zinc finger, C3HC4 type (RING finger) 265 294 IPR018957 GO:0046872(InterPro)
Sed04g0499 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 213 IPR000571 GO:0046872(InterPro)
Sed04g0499 299 SUPERFAMILY CCCH zinc finger 185 218 IPR036855 GO:0046872(InterPro)
Sed04g0499 299 ProSiteProfiles Zinc finger C3H1-type profile. 187 215 IPR000571 GO:0046872(InterPro)
Sed04g0499 299 SUPERFAMILY RING/U-box 264 296 - -
Sed04g0499 299 Gene3D - 181 218 - -
Sed04g0499 299 PANTHER ZINC FINGER PROTEIN 183 13 292 IPR039971 GO:0005684(PANTHER)|GO:0034247(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0497 Sed-Chr4:3659221 Sed04g0499 Sed-Chr4:3659221 2.80E-141 dispersed
Sed04g0499 Sed-Chr4:3659221 Sed11g0846 Sed-Chr11:19390483 3.40E-133 dispersed
Sed04g0498 Sed-Chr4:3659221 Sed04g0499 Sed-Chr4:3659221 3.20E-169 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38046 PF00097 zf-C3HC4 1.70E-05 CL0229 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0499 K13127 - csv:101221334 481.485