Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0499 | ATGACAGATACAACTGAAAATCAGCACACCAAACAAGCCTGTAGATTTTTCAGAAAACCAACAAAGAACAAAAACATCAGCAAGCGGATTATTGATGAAAACGAAGACTATGATTCTAAAACCGAGACTTGGTTTTTTTCAAACCAGAAAAAACCCACCATGATTGAGAGTAAACTTTATTTTGCTTCTGGTCCCTCTAAAATTTCCTTGACTGATAATGAGTCAAATGTGGAAGAATCTGATAAACCAATTTTCCAATTTGAGTCTTCTAAAGAAATCCAAGTTCACCATGACAGTAAAGCCACTGCAACTCTAGAATCAGAGACCGAGTTCTCTCGAGATGCACGAGTCATCCGTGAGAGAGTGCTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGAAAGACTGCTGGGGGTGAAAATTTGTATAAAGGGGTCAATTCGTATGTGGATTACAAGGCTGGATTCAGAAGGGAGCATACAATTTCAAGTGAAAAAGCTGGTGGGTCTCATGGGCCACTTCGAGCTTCTGCTCATATAAGAACTTCAACAAGACTTGATTATCAGCGTGATATTTGCAAGGATTATAAGGAGACTGGTTACTGTGGTTATGGAGATGCTTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGTTGGCGGTTGGAAGAGGAATGGGAGGAAGTTGAGAAATCAAGGAAGAGAAAATTAGCTATGGGATCTAATGATGGTGTTGAAGATGCTGCAGAACAGGGTGATGAAGAGGATGAAGATGCATTGCCATTCGCTTGTTATATTTGTTGTGAGCCATTTGTGGATCCTGTTGTGACTAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTAAAGGTAATATCTATTTCCGGTCTTAATTAA | 900 | 40.33 | MTDTTENQHTKQACRFFRKPTKNKNISKRIIDENEDYDSKTETWFFSNQKKPTMIESKLYFASGPSKISLTDNESNVEESDKPIFQFESSKEIQVHHDSKATATLESETEFSRDARVIRERVLKQAEEALKGKGKTAGGENLYKGVNSYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTSTRLDYQRDICKDYKETGYCGYGDACKFMHDRGDYKSGWRLEEEWEEVEKSRKRKLAMGSNDGVEDAAEQGDEEDEDALPFACYICCEPFVDPVVTKCKHYFCEHCALKVISISGLN | 299 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3659221 | 3661870 | + | Sed0000777.4 | Sed04g0499 | 709102 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0499 | 299 | SMART | c3hfinal6 | 187 | 214 | IPR000571 | GO:0046872(InterPro) | |
Sed04g0499 | 299 | CDD | RING-HC_RNF113A_B | 258 | 292 | - | - | |
Sed04g0499 | 299 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 219 | 297 | IPR013083 | - | |
Sed04g0499 | 299 | Pfam | Zinc finger, C3HC4 type (RING finger) | 265 | 294 | IPR018957 | GO:0046872(InterPro) | |
Sed04g0499 | 299 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 188 | 213 | IPR000571 | GO:0046872(InterPro) | |
Sed04g0499 | 299 | SUPERFAMILY | CCCH zinc finger | 185 | 218 | IPR036855 | GO:0046872(InterPro) | |
Sed04g0499 | 299 | ProSiteProfiles | Zinc finger C3H1-type profile. | 187 | 215 | IPR000571 | GO:0046872(InterPro) | |
Sed04g0499 | 299 | SUPERFAMILY | RING/U-box | 264 | 296 | - | - | |
Sed04g0499 | 299 | Gene3D | - | 181 | 218 | - | - | |
Sed04g0499 | 299 | PANTHER | ZINC FINGER PROTEIN 183 | 13 | 292 | IPR039971 | GO:0005684(PANTHER)|GO:0034247(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0497 | Sed-Chr4:3659221 | Sed04g0499 | Sed-Chr4:3659221 | 2.80E-141 | dispersed | |
Sed04g0499 | Sed-Chr4:3659221 | Sed11g0846 | Sed-Chr11:19390483 | 3.40E-133 | dispersed | |
Sed04g0498 | Sed-Chr4:3659221 | Sed04g0499 | Sed-Chr4:3659221 | 3.20E-169 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38046 | PF00097 | zf-C3HC4 | 1.70E-05 | CL0229 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0499 | K13127 | - | csv:101221334 | 481.485 |