Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0505 ATGGGAGCAGCATTTCTGATCTCTCTATATTTCTTATTCTTCTACATCATTCACCTATTAATCCGCCATTTTCAGGCTAAGATCCAGAACCGGCCGCCGTCTATTTTCCCAGCCCTGCCGTTTCTCGGCCACCTCCACCGCCTGAAGCCGCCACTCCACCGGACCTTAGCCAAGATCTCCGACGAGCACGGTCCCATTCTCCTACTCCGCTTCGGATCTCGCCCAGTCCTCCTCGTCTCCTCCTCCTCCGCCGCCGACGAATGCTTCTCCACAAACGACGTCGTCTTCGCAAACCGCCCCCGAATCCTCGCCGCCAAACACTTCGGCTACGACTCCACCGTCCTTGTTTGGGCGCCCTACGGCGACCACTGGCGCAATCTCCGCCGCATCTCCGCCCTTCACCTCCTCTCCTCCGCCAATCTCCAATCCCTCTCCTCCGTCCGCGCCGATGAGGTTCGATCCCTAATCCAAACGCTCCGTAAAACCCCTAACCAGATCGTGGATGTTAGAACTGCTCTGTTTGAATTTATGCTTAATGTAATCATGAGGATGATCGCGGGAAAGCGGTATTTCGGCGAGAACGCGGCGGATGCAGAGGAATCTCGGAATTTCAAGGAGATTGTTGCCGAGACGTTTCAATTGTCTCGGGCGAATTTGGTCGATTACTTGCCGATTCTGAAATGGATCGGGATTAGCCGGAAAACGGAGAGGATTTACATGAATCTGCAGAAGAGAAAAGACGAGTTGATTCAGAAGCTAATCGACGAGCATAGAGAGAAGAAAGAAACGATCGAATCTCCATCGAAGAAGAAGAAGTCGATGATCGAAGTAATGTTATCGCTGCAAGAATCAGATCCAGATTACTACACCGACGAAATCATCAAAGGCCATATGATGATTCTGTTATCGGCTGGGACCGACACGTCGTCCGGGACGGTAGAGTGGGCAATGGCGTTACTGCTGAACCATCCCGACATACTGGCAAAAGCAAGAACCGAAATCAATGAAAAAGTAGGCGAAAATCGGCACGTGAAGGAATCGGATTTGGAGGGCCTACCGTATCTGCAGTGTGTAATAAAGGAGACCCTACGGATGTACCCCGTAGGGCCGTTACTTGCGCCCCATGAATCGTCTGCGGATTGTAGGGTAGGTGGGTACCACGTGCCGCGTGGCACCATGTTGTTGGTGAATGCATGGGCTATCCACAACGACCCTGGCGTTTGGGAGGAGGCCGGAGTGTTTAAGCCGGAGCGATTCGAGGCGCCAGCGGAGGGCGGAGACGGGTTGAGGTACATGCCGTTTGGGGCGGGGAGGAGGGGGTGCCCTGGGGAAGGGCTGGCGATGAAAATGGTGGGGTTGGTTTTGGGGTCGTTGATTCAGTGCTTTGAGTGGGAGAGAATTGGGGAAGAAATGGTGGACATGGGTGAAGGGACTGGGTTGTCCATGCCCAGGGCTGTCCCTTTGCAAGCTAAGTTCTAG 1479 53.68 MGAAFLISLYFLFFYIIHLLIRHFQAKIQNRPPSIFPALPFLGHLHRLKPPLHRTLAKISDEHGPILLLRFGSRPVLLVSSSSAADECFSTNDVVFANRPRILAAKHFGYDSTVLVWAPYGDHWRNLRRISALHLLSSANLQSLSSVRADEVRSLIQTLRKTPNQIVDVRTALFEFMLNVIMRMIAGKRYFGENAADAEESRNFKEIVAETFQLSRANLVDYLPILKWIGISRKTERIYMNLQKRKDELIQKLIDEHREKKETIESPSKKKKSMIEVMLSLQESDPDYYTDEIIKGHMMILLSAGTDTSSGTVEWAMALLLNHPDILAKARTEINEKVGENRHVKESDLEGLPYLQCVIKETLRMYPVGPLLAPHESSADCRVGGYHVPRGTMLLVNAWAIHNDPGVWEEAGVFKPERFEAPAEGGDGLRYMPFGAGRRGCPGEGLAMKMVGLVLGSLIQCFEWERIGEEMVDMGEGTGLSMPRAVPLQAKF 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3777152 3779023 - Sed0014261.1 Sed04g0505 709108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0505 492 PANTHER CYTOCHROME P450 82C3-RELATED 12 491 IPR050651 -
Sed04g0505 492 PRINTS P450 superfamily signature 441 452 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0505 492 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0505 492 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0505 492 PRINTS P450 superfamily signature 432 441 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0505 492 Pfam Cytochrome P450 33 483 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0505 492 Gene3D Cytochrome P450 25 492 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0505 492 CDD CYP81 64 488 - -
Sed04g0505 492 SUPERFAMILY Cytochrome P450 32 492 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0505 492 PRINTS E-class P450 group I signature 176 194 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0505 492 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0505 492 PRINTS E-class P450 group I signature 431 441 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0505 492 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0505 492 PRINTS E-class P450 group I signature 84 105 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0505 492 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0505 492 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0505 492 PRINTS E-class P450 group I signature 441 464 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0505 492 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed04g0505 492 Coils Coil 232 259 - -
Sed04g0505 492 FunFam Cytochrome P450 family protein 23 492 - -
Sed04g0505 492 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 434 443 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0505 Sed-Chr4:3777152 Sed13g1793 Sed-Chr13:22975412 1.10E-144 dispersed
Sed04g0504 Sed-Chr4:3750180 Sed04g0505 Sed-Chr4:3777152 9.90E-224 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0505 - - - 0.0