Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0506 ATGGCCACTTCAGTGCACAACAATCGCCAATTTCCCCATCTAGAATCCCCCATTCGTGGCTGCAATTTCCCCTCCAATCCAGAATTTACAATGCTCAATGACAAACCTGTTGATCAAATGGACAACGACCAAGATTTCTCCAGCGACGAAGAAATCGAGCCCGATTTCACCCATTTGATCCGCAAAGGAATCGCCCAATTGGAGCCCTCGATTCTCGATGCTAGGGACTCCGGAACCGCCGATAGCTGGATCGAGCGGAACCGGTCCATGCTTCGTCTCACGGGCAAACATCCGTTTAATTCGGAGCCTCCTTTACCCCAATTGATGCACCATGGATTCATTACCCCGGTCCCGCTCCATTACGTCCGAAACCACGGTCCGGTCCCGAAAGCCAAATGGGAGGATTGGACCGTCGAGGTCTGCGGTCTAGTGAAAAAACCAACTCTCTTCACACTAGACCAACTCGTTAACGAGTTTCGTAGCCGGGAGTTCCCGGCTACGCTCGTGTGTGCCGGGAACCGGCGCAAGGAGCAGAACATGGTGAAGAAAACTATAGGATTCAATTGGGGCGCCGCCGGGACCGCCACGTCGGTCTGGCGCGGGGTCCCACTGCGGGATGTTTTGAGACGATGTGGGATATTTAGTAGTAAAAATGGAGCTCTCAATGTGTGTTTCGAAGGAGCCGAGGACTTGCCGGGTGGCGGCGGGTCCAAGTATGGAACTAGTCTAAGAAAAGAAATAGCCCTCGACCCGTCTAGAGATATAATCCTTGCCTATATGCAAAATGGCGAGGTTTTGGCACCGGACCATGGGTTTCCGGTTCGAGTCATCGCGCCCGGGTTCATTGGCGGGCGCATGGTCAAATGGCTCAAACGAATTATAGTAACCACGCAAGAGTGCGATAGTTATTACCATTATAGAGACAACAAAGTCCTCCCTTCACATGTCGATGCCGAATTGGCCAACGCGGAAGCTTGGTGGTACAAACCAGAATGTACTATATGCGAATTGAACATAAACTCGATCATAACAACACCATGTCACGAGGAAATATTGCCCATAAATTCATGGACGACCCAACGTCCATACACAATGAAGGGATATGCATATTCGGGAGGAGGAAAGAAAGTGACACGAGTAGAGGTGACAATGGATGGAGGAGAGTCGTGGCATGTTTGTAAATTAGAGCGACCCGAAAAGGCAACAAAATATGGCAAGTATTGGTGTTGGTGTTTTTGGTCATTGGAAGTTGAGGTTCTTGACTTGCTTGCTGCTAAGGAAATTGCAGTCCGAGCTTGGGATGAAACCTTCAACACTCAACCTGAAAAGCTCATTTGGAATCTCATGGGAATGATGAACAATTGCTGGTTTCGAGTCAAAACCAACATGTGCAAACCTCACAAGGGAGAGATCGGGATCGTTTTCGAACACCCGACCTTACCTGGCAACCAATCTGGGGGATGGATGGCCAAAGAGAAACATCTCGAGATATCGACCGAAACCAACCAAACCATGAAGAAAAGTGTCTCATCCCCATTCATCAACACTGCCTCGAAGACGTACTCCATGTCCGAAGTCAAAACACACAACTCGAACCAATCTGCTTGGATCGTCGTCCACGGCCATGTTTACGACTGCACTTCCTTCCTTAAAGACCACCCCGGCGGCACGGATAGCATTCTAATCAATGCTGGTACCGACTGCACCGAGGAATTCGATGCCATCCACTCCGACAAAGCCAAGAAAACGCTAGAGGAGTATCGAATCGGCGAGCTCATCACCACTGGTTACACCTCTGATTCCTCCCCCAATGACTCCCTCCATGGGCTAGCCCCAATCACAGAGATGGCTGCACCACTTAGGCGCGTGGCTCTAGTTCCACGCGAAAAAATCCCCTGCAAATTGATATCGAAAATGTCAATCTCACACGACGTGAGACGGTTCAGATTCGCGCTGCCATCAGAGGATCAGATCCTTGGATTGCCAGTGGGAAAGCACATATTCCTCTGCGCCCATATAGACGGCAAGCTCTGTATGAGAGCCTACACGCCAACGAGCGGCATCGATCAACTCGGCCATTTCGATCTCGTCGTAAAAATCTACTCGAAAAACACACACCCAAAATTCCCCAATGGGGGGCTAATGTCACAGCATTTGGACTCCCTCCCATTGGGGTCAGAGCTAGAAGTGAAAGGACCATTAGGACACATCGAATACACCGGGCGAGGCAACTTTCTAGTCGACGGGAAGCCAAGGAAGGCGAAGAAGCTAGCCATGGTGGCAGGTGGAACGGGGATAACACCGATATATCAAGTGGCGCAAGCGATATTAAAGGATCCCGAGGACGAAACGGAGATGTTTGTAATATATGCAAACAGAACTGAAAATGACATTTTGTTAAAGGAAGAGTTGGATGAATGGGCCAAGAGTGATAAGAGGTTCAAAGTATGGTATGTTGTGCAAGAAAGTGTTAAGGAAGGGTGGGAATTCAGTGTGGGTGTGATCACGGAGAGTATCATGAGGGATCATCTTCCCGAAGCATCGCCGGAAACGATGGCGTTGGCTTGTGGACCGCCGCCGATGATCAAGTTCGCCGTGCAACCGAACTTGGAGAAGATGAACTACGACACTGCCAATTCATTGTTGGTGTTCTAG 2655 49.72 MATSVHNNRQFPHLESPIRGCNFPSNPEFTMLNDKPVDQMDNDQDFSSDEEIEPDFTHLIRKGIAQLEPSILDARDSGTADSWIERNRSMLRLTGKHPFNSEPPLPQLMHHGFITPVPLHYVRNHGPVPKAKWEDWTVEVCGLVKKPTLFTLDQLVNEFRSREFPATLVCAGNRRKEQNMVKKTIGFNWGAAGTATSVWRGVPLRDVLRRCGIFSSKNGALNVCFEGAEDLPGGGGSKYGTSLRKEIALDPSRDIILAYMQNGEVLAPDHGFPVRVIAPGFIGGRMVKWLKRIIVTTQECDSYYHYRDNKVLPSHVDAELANAEAWWYKPECTICELNINSIITTPCHEEILPINSWTTQRPYTMKGYAYSGGGKKVTRVEVTMDGGESWHVCKLERPEKATKYGKYWCWCFWSLEVEVLDLLAAKEIAVRAWDETFNTQPEKLIWNLMGMMNNCWFRVKTNMCKPHKGEIGIVFEHPTLPGNQSGGWMAKEKHLEISTETNQTMKKSVSSPFINTASKTYSMSEVKTHNSNQSAWIVVHGHVYDCTSFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKTLEEYRIGELITTGYTSDSSPNDSLHGLAPITEMAAPLRRVALVPREKIPCKLISKMSISHDVRRFRFALPSEDQILGLPVGKHIFLCAHIDGKLCMRAYTPTSGIDQLGHFDLVVKIYSKNTHPKFPNGGLMSQHLDSLPLGSELEVKGPLGHIEYTGRGNFLVDGKPRKAKKLAMVAGGTGITPIYQVAQAILKDPEDETEMFVIYANRTENDILLKEELDEWAKSDKRFKVWYVVQESVKEGWEFSVGVITESIMRDHLPEASPETMALACGPPPMIKFAVQPNLEKMNYDTANSLLVF 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3787345 3791073 - Sed0022627.1 Sed04g0506 709109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0506 884 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 628 740 IPR017927 GO:0016491(InterPro)
Sed04g0506 884 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 549 556 IPR018506 GO:0020037(InterPro)
Sed04g0506 884 SMART Cyt_b5_2 521 593 IPR001199 -
Sed04g0506 884 PRINTS Cytochrome B5 signature 543 553 IPR001199 -
Sed04g0506 884 PRINTS Cytochrome B5 signature 568 575 IPR001199 -
Sed04g0506 884 PRINTS Cytochrome B5 signature 553 567 IPR001199 -
Sed04g0506 884 PRINTS Cytochrome B5 signature 580 592 IPR001199 -
Sed04g0506 884 FunFam Nitrate reductase [NADH] 735 884 - -
Sed04g0506 884 CDD eukary_NR_Moco 76 461 - -
Sed04g0506 884 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 142 177 IPR022407 GO:0043546(InterPro)
Sed04g0506 884 Gene3D - 514 595 IPR036400 -
Sed04g0506 884 PANTHER SULFITE REDUCTASE 64 466 - GO:0006790(PANTHER)|GO:0008482(PANTHER)|GO:0020037(PANTHER)|GO:0043546(PANTHER)
Sed04g0506 884 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 758 777 IPR001709 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 796 807 IPR001709 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 852 860 IPR001709 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 784 793 IPR001709 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 680 687 IPR001709 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 552 562 IPR001709 GO:0016491(InterPro)
Sed04g0506 884 Pfam Oxidoreductase molybdopterin binding domain 125 304 IPR000572 -
Sed04g0506 884 CDD cyt_b5_reduct_like 633 879 - -
Sed04g0506 884 PRINTS Cytochrome B5 reductase signature 659 670 - -
Sed04g0506 884 PRINTS Cytochrome B5 reductase signature 852 860 - -
Sed04g0506 884 PRINTS Cytochrome B5 reductase signature 725 739 - -
Sed04g0506 884 PRINTS Cytochrome B5 reductase signature 680 687 - -
Sed04g0506 884 PRINTS Cytochrome B5 reductase signature 758 777 - -
Sed04g0506 884 PRINTS Cytochrome B5 reductase signature 796 807 - -
Sed04g0506 884 FunFam Nitrate reductase 514 595 - -
Sed04g0506 884 FunFam NADH-cytochrome b5 reductase 620 734 - -
Sed04g0506 884 Gene3D - 336 512 - -
Sed04g0506 884 Pfam Mo-co oxidoreductase dimerisation domain 333 462 IPR005066 GO:0016491(InterPro)|GO:0030151(InterPro)
Sed04g0506 884 Pfam Oxidoreductase FAD-binding domain 633 739 IPR008333 -
Sed04g0506 884 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 518 593 IPR001199 -
Sed04g0506 884 FunFam Nitrate reductase 336 512 - -
Sed04g0506 884 MobiDBLite consensus disorder prediction 1 31 - -
Sed04g0506 884 Gene3D - 735 884 IPR039261 -
Sed04g0506 884 Pfam Oxidoreductase NAD-binding domain 759 866 IPR001433 GO:0016491(InterPro)
Sed04g0506 884 Gene3D Translation factors 621 734 - -
Sed04g0506 884 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 517 598 IPR036400 -
Sed04g0506 884 FunFam Nitrate reductase 77 326 - -
Sed04g0506 884 Gene3D - 75 326 IPR036374 -
Sed04g0506 884 PRINTS Eukaryotic molybdopterin domain signature 177 189 IPR008335 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Eukaryotic molybdopterin domain signature 192 207 IPR008335 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Eukaryotic molybdopterin domain signature 444 457 IPR008335 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Eukaryotic molybdopterin domain signature 379 391 IPR008335 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Eukaryotic molybdopterin domain signature 365 379 IPR008335 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Eukaryotic molybdopterin domain signature 166 177 IPR008335 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Eukaryotic molybdopterin domain signature 91 105 IPR008335 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Eukaryotic molybdopterin domain signature 113 129 IPR008335 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Eukaryotic molybdopterin domain signature 431 443 IPR008335 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Eukaryotic molybdopterin domain signature 267 280 IPR008335 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Eukaryotic molybdopterin domain signature 250 266 IPR008335 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Eukaryotic molybdopterin domain signature 334 346 IPR008335 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Eukaryotic molybdopterin domain signature 406 416 IPR008335 GO:0016491(InterPro)
Sed04g0506 884 PRINTS Eukaryotic molybdopterin domain signature 283 296 IPR008335 GO:0016491(InterPro)
Sed04g0506 884 Pfam Cytochrome b5-like Heme/Steroid binding domain 523 592 IPR001199 -
Sed04g0506 884 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 74 334 IPR036374 -
Sed04g0506 884 SUPERFAMILY E set domains 336 461 IPR014756 -
Sed04g0506 884 SUPERFAMILY Riboflavin synthase domain-like 622 740 IPR017938 -
Sed04g0506 884 PIRSF Nitr_rd_NADH 12 883 IPR012137 GO:0006809(InterPro)|GO:0042128(InterPro)|GO:0050464(InterPro)
Sed04g0506 884 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 728 878 IPR039261 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0506 K10534 - - csv:101216001 1537.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0837 Sed-Chr3:5028572 Sed04g0506 Sed-Chr4:3787345 0.00E+00 dispersed
Sed03g0838 Sed-Chr3:5046270 Sed04g0506 Sed-Chr4:3787345 0.00E+00 dispersed
Sed04g0506 Sed-Chr4:3787345 Sed11g2256 Sed-Chr11:35875390 2.70E-53 dispersed
Sed04g0506 Sed-Chr4:3787345 Sed10g1434 Sed-Chr10:30517212 2.80E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90