Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed04g0519 | ATGGATTTTTACAATGAAGAACTTCAAACCAACCACTTTGGTGGTGAACTAATGGAAGCAATTCAACCTTTTATTAAAGTTGCTTCCTCTGTTTCTTCTAATTCTTATTCCTTCTCTAACTCAGTTCCTCACCACTCCAATTTGTACTCAAATGACTGCTTCTTCACTTCGATGAACCCGGTATTTTCAGATCGGTTCTCGACCCGAAACCTCATCGGTTTTGAGCAGCAACATCAACCACACAGGTTCCTCAGCCCCAAGCCAACCCCAATGAAGCAAGTGGGTTCATTTTCAAAGCCCACCAAGCTTTATAGAGGGGTAAGGCAAAGGCATTGGGGGAAATGGGTAGCCGAGATTCGACTACCGAGAAACCGAACTCGGCTTTGGCTCGGCACGTTCGACACGGCCGAGGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCAGAGGGGACTCTGCCAGACTCAATTTCCCACAACTCAAGCACCAAGGCGAGTACACGCCTCTACATTCCTCAGTTGATGCTAAACTCAATGCAATTTGTGACAACTTGGCCAAGCCACAAAAACAAGGCAACTCAAACAAGCCTGTTATGGTGGCCGAGGCAGAGGCTGCGAAGGTGGAGAACTCCCCGTCGTTGGTTACGACAGAGAGCGACGGGTCCGCAGCGTCTTCGCCTTTGTCGGATCTTACATTCCTTGATTTCACAGAGTTGCAATGGGATCAGAATCAAGCTTGGGAGGGTTCAATGCTGGAGAAATATCCTTCTGAGATAGATTGGGCATCCATTTTACCTTAA | 804 | 47.76 | MDFYNEELQTNHFGGELMEAIQPFIKVASSVSSNSYSFSNSVPHHSNLYSNDCFFTSMNPVFSDRFSTRNLIGFEQQHQPHRFLSPKPTPMKQVGSFSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPQLKHQGEYTPLHSSVDAKLNAICDNLAKPQKQGNSNKPVMVAEAEAAKVENSPSLVTTESDGSAASSPLSDLTFLDFTELQWDQNQAWEGSMLEKYPSEIDWASILP | 267 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3844151 | 3845543 | - | Sed0020153.1 | Sed04g0519 | 709122 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed04g0519 | 267 | Gene3D | AP2/ERF domain | 103 | 161 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0519 | 267 | SMART | rav1_2 | 103 | 166 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0519 | 267 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 8 | 265 | IPR051758 | GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Sed04g0519 | 267 | SUPERFAMILY | DNA-binding domain | 103 | 161 | IPR016177 | GO:0003677(InterPro) | |
Sed04g0519 | 267 | FunFam | Ethylene-responsive transcription factor 2 | 102 | 161 | - | - | |
Sed04g0519 | 267 | MobiDBLite | consensus disorder prediction | 211 | 228 | - | - | |
Sed04g0519 | 267 | PRINTS | Ethylene responsive element binding protein signature | 126 | 142 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0519 | 267 | PRINTS | Ethylene responsive element binding protein signature | 104 | 115 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0519 | 267 | Pfam | AP2 domain | 103 | 152 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0519 | 267 | ProSiteProfiles | AP2/ERF domain profile. | 103 | 160 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0519 | 267 | CDD | AP2 | 102 | 160 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed04g0519 | 267 | MobiDBLite | consensus disorder prediction | 206 | 228 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g0519 | Sed-Chr4:3844151 | Sed10g0864 | Sed-Chr10:6490632 | 1.10E-55 | dispersed | |
Sed12g1433 | Sed-Chr12:11968969 | Sed04g0519 | Sed-Chr4:3844151 | 6.70E-101 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38048 | PF00847 | AP2 | 1.70E-15 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed04g0519 | K09286 | - | csv:101214560 | 367.081 |