Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0519 ATGGATTTTTACAATGAAGAACTTCAAACCAACCACTTTGGTGGTGAACTAATGGAAGCAATTCAACCTTTTATTAAAGTTGCTTCCTCTGTTTCTTCTAATTCTTATTCCTTCTCTAACTCAGTTCCTCACCACTCCAATTTGTACTCAAATGACTGCTTCTTCACTTCGATGAACCCGGTATTTTCAGATCGGTTCTCGACCCGAAACCTCATCGGTTTTGAGCAGCAACATCAACCACACAGGTTCCTCAGCCCCAAGCCAACCCCAATGAAGCAAGTGGGTTCATTTTCAAAGCCCACCAAGCTTTATAGAGGGGTAAGGCAAAGGCATTGGGGGAAATGGGTAGCCGAGATTCGACTACCGAGAAACCGAACTCGGCTTTGGCTCGGCACGTTCGACACGGCCGAGGAAGCTGCCTTGGCATATGACAAGGCAGCCTTCAAGCTCAGAGGGGACTCTGCCAGACTCAATTTCCCACAACTCAAGCACCAAGGCGAGTACACGCCTCTACATTCCTCAGTTGATGCTAAACTCAATGCAATTTGTGACAACTTGGCCAAGCCACAAAAACAAGGCAACTCAAACAAGCCTGTTATGGTGGCCGAGGCAGAGGCTGCGAAGGTGGAGAACTCCCCGTCGTTGGTTACGACAGAGAGCGACGGGTCCGCAGCGTCTTCGCCTTTGTCGGATCTTACATTCCTTGATTTCACAGAGTTGCAATGGGATCAGAATCAAGCTTGGGAGGGTTCAATGCTGGAGAAATATCCTTCTGAGATAGATTGGGCATCCATTTTACCTTAA 804 47.76 MDFYNEELQTNHFGGELMEAIQPFIKVASSVSSNSYSFSNSVPHHSNLYSNDCFFTSMNPVFSDRFSTRNLIGFEQQHQPHRFLSPKPTPMKQVGSFSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPQLKHQGEYTPLHSSVDAKLNAICDNLAKPQKQGNSNKPVMVAEAEAAKVENSPSLVTTESDGSAASSPLSDLTFLDFTELQWDQNQAWEGSMLEKYPSEIDWASILP 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3844151 3845543 - Sed0020153.1 Sed04g0519 709122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0519 267 Gene3D AP2/ERF domain 103 161 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0519 267 SMART rav1_2 103 166 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0519 267 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 8 265 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Sed04g0519 267 SUPERFAMILY DNA-binding domain 103 161 IPR016177 GO:0003677(InterPro)
Sed04g0519 267 FunFam Ethylene-responsive transcription factor 2 102 161 - -
Sed04g0519 267 MobiDBLite consensus disorder prediction 211 228 - -
Sed04g0519 267 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0519 267 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0519 267 Pfam AP2 domain 103 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0519 267 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0519 267 CDD AP2 102 160 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed04g0519 267 MobiDBLite consensus disorder prediction 206 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0519 Sed-Chr4:3844151 Sed10g0864 Sed-Chr10:6490632 1.10E-55 dispersed
Sed12g1433 Sed-Chr12:11968969 Sed04g0519 Sed-Chr4:3844151 6.70E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38048 PF00847 AP2 1.70E-15 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0519 K09286 - csv:101214560 367.081