Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0534 ATGGTAAAATTACGAAATCATAATAGTATTATATACCATAAATCTAACGGAAAAACGATGAGGTCGTGGCCGGTAGGAATGGCAGTTCTCGAATGTCACGTGCTACTCCGCTCTTCCCTCACGTGCCTTAGCCGCTCAACAAATTTGTCATGGAAAAATTTCGACCATAAAATTCTCAAACTGGGTAGCTGTCAGAGCCAAAAGGCTAATCAAATGGAAGAAGCTTTTGTTGACGCCGACAAATTTCGGGCCGAATTCCGTGAAGTTCTGCGTTGTAGACGATCTGAAGAAGTTCCTCTGAATGTGAAGCTCACAACGCCTGTTCAACACCCTCTGATTCAGGAGGCGACACCGCCAACTTTCAGTAAGGCGATGACATCTTGTCCAAAGGCGACATTTAGTAATTTAAAGGACTTGCTTCATGAGGAAAATCTTCATCTGACTACAGAGGAAGGAGAGCAAGGGCAGTTGCCCATATTGATTATAAGCATGAAGGATACCAGACAGGAAAAAAGACCTGCAATTGTTTTTCTGCACAGTACAAACAAGTGCAAAGAGTGGTTGAGACCGTTGCTTGAGGCTTATGCATCAAGGGGATATGTAGCCATTGCCATTGATTCTCGTTACCACGGTGAAAGGGCCAAGAACAAAACCACATACCGTGATGCTCTTGTATCTTCATGGAAAAGAGGTGATACCATGCCGTTCATATTTGATACGGTATGGGACTTGATAAAATTGGCAGATTATCTGACAAAAAGGGAGGACATTGACCCACGTAGAATAGGAATTACTGGCGAATCACTTGGAGGAATGCATGCATGGTTTGCTGCTGCTGCTGACACTCGCTATGCTGTGGTTGTCCCCATAATTGGCGTGCAGGGTTTTCGATGGGCCGTAGATAATGATAAGTGGCAGGCACGAGTTGAGAGCATAAAATCTGTTTTTGAGGAAGCACGAACTGAATTAGGCATGAATGAGATCAACAAAGAAGTGGTGCAGAAGGTGTGGAATAGGATTGCTCCTGGTTTAAATTCCCAATTTGACTCAATTTATTCAGTTCCAGTTATAGCACCACGTCCTCTGTTGTTATTAAATGGTGCAGATGACCCTCGATGTCCAATTGCTGGATTGGATGGTCCCGTATCAAGAACACAAGCAGTTTATCAGAATTTTGGTTGTCCAGAAAATTTTAAGTTCATCTCACAACCTGGGATTGGCCACCAAATGACACCAGAGATGGTAAAAGAAGCTAGCTATTGGTTTGACAGGTTTTTAGGCGAGAGTATCAAACACTAG 1299 43.34 MVKLRNHNSIIYHKSNGKTMRSWPVGMAVLECHVLLRSSLTCLSRSTNLSWKNFDHKILKLGSCQSQKANQMEEAFVDADKFRAEFREVLRCRRSEEVPLNVKLTTPVQHPLIQEATPPTFSKAMTSCPKATFSNLKDLLHEENLHLTTEEGEQGQLPILIISMKDTRQEKRPAIVFLHSTNKCKEWLRPLLEAYASRGYVAIAIDSRYHGERAKNKTTYRDALVSSWKRGDTMPFIFDTVWDLIKLADYLTKREDIDPRRIGITGESLGGMHAWFAAAADTRYAVVVPIIGVQGFRWAVDNDKWQARVESIKSVFEEARTELGMNEINKEVVQKVWNRIAPGLNSQFDSIYSVPVIAPRPLLLLNGADDPRCPIAGLDGPVSRTQAVYQNFGCPENFKFISQPGIGHQMTPEMVKEASYWFDRFLGESIKH 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3958871 3965717 - Sed0008402.1 Sed04g0534 709137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0534 432 Gene3D alpha/beta hydrolase 63 426 IPR029058 -
Sed04g0534 432 Pfam Prolyl oligopeptidase family 195 376 IPR001375 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed04g0534 432 SUPERFAMILY alpha/beta-Hydrolases 141 427 IPR029058 -
Sed04g0534 432 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 72 427 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0534 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g316 . Blo12g00759 . Bda03g00427 . . Bma04g00402 . . . Cma01g01432 . Car09g00568 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02338 Csa03g04559 Chy04g00143 . . . . . . Bpe04g00393 . . Sed04g0534 Cmo01g01481 Cmo09g00625 Cma09g00643 . . . . Cpe02g00516 Bhi09g02595 Tan01g3944 Cmetu04g1421 . Hepe01g2228 Mch11g0778 . . . . . . . . . . . Cme04g00168
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006905 2 1 1 1 1 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35