Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0541 ATGGGGTTTCATCGTTTTTTGGTTTTGATTCTTCTCGTCGTTTCTTCTGTCGATTGTCAGGTTAAAGAGTTTGTGAGTATAGACTGTGGTGGCTTGAAGAACTACACCGACCCAGTTACAGGCTTGGCATGGATTTCCGACGCCGGAATCATGGCCGCCGGTGGGTCATCGCCGGTGGAAAACCCAAATGGGAATTCGATTCAGTACCAAACGCGGCGGGATTTTCCAATCGATGGGAAGAAGTACTGTTACAGTTTGAAAACAGAGGAGAGAAGAAGGTATTTGGTTAGGGCAACTTTTCAGTATGGGAGTTTGAAGAATGAAGAAACTTACCCTAAATTTCAGCTTTATTTGGATGCAACAAAGTGGTCTACTGTTACAATTTTTGATGCCTCTAGAGTTTATGTGAAGGAGATGATCATTAGGGCACCTTCAGATTCTTTTGATGTGTGTATTTGCTGTGCAACCACTGGTTCTCCATTTATATCCACTCTTGAGCTTCGCCCTTTTAACCTTTCCATGTATGCGACTGATTTTGAAGATGGGTTCTTCTTGGAAGTAGCTGCTAGAGTGAATTTTGGTGCTTTGACCAAGGATGTGATTAGGTACCCAGATGATCCCTATGACAGAATTTGGGATTCAGACCTTGAGAAGAGGCAAAATTATCTTGTGGGGGTGGCTCCTGGGACAGAAAGAATCAGTACTTTGAACAACATTAATGTAATGACAAGAGAATATCCACCTGTTAAGGTGATGCAAACTGCAGTTCTTGGCACAAAAGGAGTGCTCAGCTACAGGTTGAATTTGGATGATTTTCCTGCCAATGCCAGGGCTTATGCATATTTTGCTGAAATTGAAGTTTTGGGTCAGAATGAGACTCGAAAGTTCAAATTGGAGGATCCAAACGTTCCGGATTCAAGCAATGCAGTGGTGAATATTGCTGAGAATGCTAATGGGACCTATACTCTTTACGAACCAAGTTATATGAATGTGACTCTGAGCTTTGTGCTTTCGTTCTCCTTTGTCAAGACTCCAGATTCGACACGAGGGCCACTTTTGAATGCATTGGAAATTAGTAGATATGTTGAGATTGCTGCAAAGACTGATGGACGAGATGAGACTGTTGTGAATGCCTTGCGTATGATGTCAGAGGAGAGTGTTTGGACAAATCAAGGCGATCCTTGTGTTCCAACAAGCTGGGAATGGGTGCTTTGTTCGGCCACGAAACCGCCCAGAATATCTAAAATTGAGCTTTCCAGAAAGAATGTCAAGGGTGAAATTCCTCCTGAGATCAATACTATGGATGGATTAACGGAATTGTGGTTAGATGGTAATTCTCTTGCAGGACCACTGCCTGACATGAGTAATCTGATAAACTTGAAGATTTTACATCTAGAGAATAATAAATTGACAGGGACATTACCTTCTTTCCTGGGTGGTCTGCCCAACTTACAGGAACTATATATTCAAAACAATACTTTTACGGGTGAAATACCTTCGGAATTATTGGCAAAGAAACTCATCTTCAAGTACAACGGTAACTTGGAGCTGCACAAAAGTAAACGATACACTATGCATTCTAAGCTTATATTAGAAGTTTCATTGGGAGTGCTTGTGCTTCTAACTATTCTACTTGTTGGAAGTTTTCTGTTACTCCACAAGCTACGGAAAAGGACGACGCCGTATCAGAAAAAAGGTGGCTCTCTGCAAATCAGCACCAAGCGCTCTTCGGGCTACTCGATCGGCAAGGGGGACGAAGGCATTGCCTACTATTTATCTCTTTCCGAGCTGGAAGAAGCAACAAATAACTATTCTAAGAAAATTGGAAAAGGCAGCTTCGGGTCAGTCTATTATGGGAAGATGGCAGATGGAAAGGAAGTGGCAGTTAAAATCATGGGCGAGTTATCTGCACATGGGGATCAACAATTTACGACTGAGGTTTCCCTCTTGTCAAGAATTCATCACCGAAATTTGGTCCCTTTGATCGGTTACTGCGAAGAAGAACATCAACGGATTCTGGTTTATGAATATATGCATAATGGAACATTGCGAGATCACTTATATGGTACGAATCAAAAGCACTTGGACTGGCTACCGCGCCTGCACATTGCAGAAGATGCAGCTAAAGGGCTCGAGTATTTGCACACGGGATGCAGCCCGAGTATAATTCATCGAGATGTGAAAACAAGCAACATACTTCTTGACATTAATATGAGAGCAAAAGTTTCCGACTTTGGACTCTCAAGGCAAACCGAGGAAGATTTGACCCATGTATCAAGTGTCGCTCGAGGAACAGTAGGCTACTTGGATCCTGAGTACTATGCTAGTCAACAACTGACCGAAAAGAGTGACGTCTATAGTTTCGGGGTGGTTCTGCTCGAACTGATCTCTGGGAAGAAACCTGTCTCCCCTGAAGACTATGGAAGTGAATTGAACATTGTCCACTGGGCGAGGTCTTTGGTTCATAAAGGGGACGTGGCAAGCATCGTAGACCCATATCTAGAAGGAAAAGTCAAAATCGAATCCGTATGGAGAATTGCTGAAGTTGCAATTCAGTGTGTGCAGCAGCATGGAGTTTCCAGGCCAAGGATGCAAGAAGTCATCTTGGCCATTCAAGATGCAATGAAGATTGAACAAGGCGCTGAAGGAAACCATAAACTATCTTCTGGTAGTTCAAGAGCACAATCATCTCGGAAAACTTTGCTGACATCGTTTCTTGAGATCGAGAGCCCTGACGGTTCCCTCCTTCCCTCTGCAAGATAA 2763 43.14 MGFHRFLVLILLVVSSVDCQVKEFVSIDCGGLKNYTDPVTGLAWISDAGIMAAGGSSPVENPNGNSIQYQTRRDFPIDGKKYCYSLKTEERRRYLVRATFQYGSLKNEETYPKFQLYLDATKWSTVTIFDASRVYVKEMIIRAPSDSFDVCICCATTGSPFISTLELRPFNLSMYATDFEDGFFLEVAARVNFGALTKDVIRYPDDPYDRIWDSDLEKRQNYLVGVAPGTERISTLNNINVMTREYPPVKVMQTAVLGTKGVLSYRLNLDDFPANARAYAYFAEIEVLGQNETRKFKLEDPNVPDSSNAVVNIAENANGTYTLYEPSYMNVTLSFVLSFSFVKTPDSTRGPLLNALEISRYVEIAAKTDGRDETVVNALRMMSEESVWTNQGDPCVPTSWEWVLCSATKPPRISKIELSRKNVKGEIPPEINTMDGLTELWLDGNSLAGPLPDMSNLINLKILHLENNKLTGTLPSFLGGLPNLQELYIQNNTFTGEIPSELLAKKLIFKYNGNLELHKSKRYTMHSKLILEVSLGVLVLLTILLVGSFLLLHKLRKRTTPYQKKGGSLQISTKRSSGYSIGKGDEGIAYYLSLSELEEATNNYSKKIGKGSFGSVYYGKMADGKEVAVKIMGELSAHGDQQFTTEVSLLSRIHHRNLVPLIGYCEEEHQRILVYEYMHNGTLRDHLYGTNQKHLDWLPRLHIAEDAAKGLEYLHTGCSPSIIHRDVKTSNILLDINMRAKVSDFGLSRQTEEDLTHVSSVARGTVGYLDPEYYASQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGSELNIVHWARSLVHKGDVASIVDPYLEGKVKIESVWRIAEVAIQCVQQHGVSRPRMQEVILAIQDAMKIEQGAEGNHKLSSGSSRAQSSRKTLLTSFLEIESPDGSLLPSAR 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4018226 4024419 + Sed0005961.1 Sed04g0541 709144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0541 920 Gene3D Ribonuclease Inhibitor 374 524 IPR032675 -
Sed04g0541 920 Gene3D Transferase(Phosphotransferase) domain 1 678 893 - -
Sed04g0541 920 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 407 505 - -
Sed04g0541 920 SUPERFAMILY L domain-like 395 518 - -
Sed04g0541 920 SUPERFAMILY Protein kinase-like (PK-like) 587 868 IPR011009 -
Sed04g0541 920 Pfam Protein tyrosine and serine/threonine kinase 605 868 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g0541 920 SMART serkin_6 602 876 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0541 920 Pfam Malectin-like domain 27 359 IPR024788 -
Sed04g0541 920 Gene3D Phosphorylase Kinase; domain 1 586 677 - -
Sed04g0541 920 ProSiteProfiles Protein kinase domain profile. 602 875 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed04g0541 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 722 734 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed04g0541 920 Pfam Leucine Rich repeats (2 copies) 459 494 IPR025875 -
Sed04g0541 920 PANTHER OS07G0107800 PROTEIN-RELATED 454 878 - -
Sed04g0541 920 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 678 884 - -
Sed04g0541 920 ProSitePatterns Protein kinases ATP-binding region signature. 608 630 IPR017441 GO:0005524(InterPro)
Sed04g0541 920 FunFam receptor-like serine/threonine-protein kinase NCRK 582 677 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0738 Sed-Chr2:45114814 Sed04g0541 Sed-Chr4:4018226 1.40E-238 dispersed
Sed04g0541 Sed-Chr4:4018226 Sed06g0114 Sed-Chr6:734630 5.60E-118 dispersed
Sed13g0492 Sed-Chr13:3364519 Sed04g0541 Sed-Chr4:4018226 3.10E-65 dispersed
Sed13g0493 Sed-Chr13:3364519 Sed04g0541 Sed-Chr4:4018226 3.10E-65 dispersed
Sed04g0541 Sed-Chr4:4018226 Sed04g1316 Sed-Chr4:27534978 5.80E-240 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78962 PF12819 Malectin_like 5.10E-87 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0541 - - - 0.0