Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0545 ATGGCGATCTGTGCCGTCGCCGGCGGTTGCCCCAGCGATTACATCGCCATAGCTTTTGCTGCACTTTGTATGGCTTTGCTGATCTTTCGGTCGATATTGCCGTATGTAATTTACAAGATTCCACTTCCCAAAGGCAGCCGGTTTTGGATTCCAGTAATTCAAGTTTTTGCTAGCCTCAATCTCCTGCTGTCAATTGTGATATCTCTAAGTTTCCTCAAATTCAAGAGGAAGATGTGGCGGTCTTGCTATATTTGGGCAGTGTGGGTTGAAGGTCCCCTTGGTTTTGGTTTGCTGTTGAGTAGTCGCATAACACAAACCTTTCAACTGTATTACATTTTTGTTAAGCGGCGTTTACCACCCATCAGAACATACATCTTCCTTCCACTGATTCTATTGCCTTGGATTATCGGGGCTACACTTATCAATGTCAAGAAACCTCTGAATTACAGGTGCCACATGGGGCCTCACTGGATTGTTCCAATCATGTCTCTCCATCTCCTTTATGTTGTTACTTTAATTGTATTTACATGGGCTGTTCGTCATATAGAGTTCAGGTTTGACGAACTTAGAGATCTGTGGAAGGGAATAATAGTTTCGGCATTTTCAATTGGAGTTTGGGTTTCTTCCTATATTACGAATGAAATCCATGAAGAGATCTTAGGACTCCAGGTTGCCTCTAGATTTCTGCTATTAGTCACGGCAAGTATTCTTGTGCTGACCTTCTTCTCTATATCAAGCTCACAACCATTGGTTTCTCAAATCAGTTTGAGAAAAAGGGAAACCCTTGAATATGACTCAATGGGTCAGGCACTGGGCATACCAGATAGTGGATTGTTACTACAGAGGGAACCAGATGCAATCATAGATCCCAGTGAACCACTGGAGAAATTACTTCTGAACAAAGGATTTCGTCAGTCATTCATGGCTTTTGCCGACAGTTGTTTAGCTGGGGAGAACGTGCACTTTTATGATGAAGTGCATGAGCTAGGAAAACTACCTTTGGACGACCCTGTCAGAAGGGTCTATATGGCAAGACATATCATTGACAACTACATCACACCAGGTGCAACAATGGAGGTGAACATTTCTCACCGATGCCGTCAAGAGATTTTAACAACTTCTGACCTGGCTGATCCCAATCTCTTCAACAATGCTCTAAATGAGCTGATACAGCTGATAAAGATGAATCTGGCAAAAGATTTCTGGTCATCAATGTTCTTTCTGAAGTTAAAAGAAGAAACAAGTATGAGATCAAACGGGCGAGACCTCGAACAAATGGCGGGTTGGAACCTTTCTCCTAGATTGAGTTCTGTACAAGGGAGTGATGATCCTTTCCACCAAGAGCAATCTTCAAAGGGTTCTGGCCATGATAGCACTCACGACTCGGAACATGAAGTGTCTAAGATTTGA 1410 42.91 MAICAVAGGCPSDYIAIAFAALCMALLIFRSILPYVIYKIPLPKGSRFWIPVIQVFASLNLLLSIVISLSFLKFKRKMWRSCYIWAVWVEGPLGFGLLLSSRITQTFQLYYIFVKRRLPPIRTYIFLPLILLPWIIGATLINVKKPLNYRCHMGPHWIVPIMSLHLLYVVTLIVFTWAVRHIEFRFDELRDLWKGIIVSAFSIGVWVSSYITNEIHEEILGLQVASRFLLLVTASILVLTFFSISSSQPLVSQISLRKRETLEYDSMGQALGIPDSGLLLQREPDAIIDPSEPLEKLLLNKGFRQSFMAFADSCLAGENVHFYDEVHELGKLPLDDPVRRVYMARHIIDNYITPGATMEVNISHRCRQEILTTSDLADPNLFNNALNELIQLIKMNLAKDFWSSMFFLKLKEETSMRSNGRDLEQMAGWNLSPRLSSVQGSDDPFHQEQSSKGSGHDSTHDSEHEVSKI 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4039284 4046755 + Sed0010682.1 Sed04g0545 709148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0545 469 ProSiteProfiles RGS domain profile. 293 411 IPR016137 -
Sed04g0545 469 MobiDBLite consensus disorder prediction 433 448 - -
Sed04g0545 469 Gene3D - 283 422 IPR044926 -
Sed04g0545 469 PANTHER REGULATOR OF G PROTEIN SIGNALING 284 416 - -
Sed04g0545 469 MobiDBLite consensus disorder prediction 449 469 - -
Sed04g0545 469 MobiDBLite consensus disorder prediction 433 469 - -
Sed04g0545 469 SMART RGS_3 293 411 IPR016137 -
Sed04g0545 469 Pfam Regulator of G protein signaling domain 294 410 IPR016137 -
Sed04g0545 469 SUPERFAMILY Regulator of G-protein signaling, RGS 284 412 IPR036305 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0545 K16449 - - csv:101218119 852.818
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g534 . . . . . . Bma14g01923 . . . . . . . Sed04g0545 . Cpe01g01858 Bhi07g01847 Tan04g0120 Cmetu10g0423 . Hepe10g1556 . . . . . . . . . . . Cone6ag0342 Cone9ag0376 Lsi04g00640 Csa05g01966 . Cme10g00626 . Blo11g00965 . . . . . . . Cmo04g02235 Cmo15g00925 Cma04g02142 Cma15g00887 Car04g02077 Car15g00833 Cpe13g00429 . Bhi12g00965 . . . . . . Cla01g00654 Cam01g0683 Cec01g0676 Cco01g0703 Clacu01g0671 Cmu01g0644 Cre09g1861 Lsi09g00708 Csa05g00994 . Cme09g01302
Vvi1g1112 . . . . . Bpe10g00771 . Bma15g00251 Cmo04g01901 . . . . . Sed04g0545 . Cpe01g01586 Bhi07g01847 Tan04g0120 Cmetu10g0423 . Hepe10g1556 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g01801 . Car04g01814 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012781 2 1 0 1 1 1 1 1 0 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 28