Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed04g0552 ATGGCGGAAACCGGCGTGTACGGGCGTTTTCCGGGGAGTTTAGACCCAAGAGCGCAAGAGTTCCGGCCGAGATATTCGACGGCGGTGTTTCTTCCGCCTCCGCCGCCGCAGCCGCAGCCGGTTTTCTTTCCGTTTCCCCCTATCGGCGAGGTTTCATTTCTCCCGTTCTGCGACGGCGGGGTAAGCTACGCGCCGTTTCCGGCGGCGGTGAGGTCGGTGGGGGAGGCGGTGTCGTCGGTCGCGACGCGGTCGCTGGCGGTTAGTTCGGTGCCTTGCGACGCAAGCGAGACGATGGTGCGGCGAGAATTGGAAGGGTTTGGCGACGTGAGAGGAGTTCAAATGGAGAGGGTTAAGGAAGGGGTTGTGATCGTCCATTTCTACGACATTCGCCACTCCGAGAGGGCGTTGCGGCAGATTCGAGATCAGCACATGAACTATCAGTGCCGTCTTCGTGACCGCCTCTCCTTTTCCAATTCCGCCGCCCAATTTCCTCTCCTTTCTCCGGCGCCGGGTCTCATCGCCGGCCATGCTGTGTGGGCCCAGTTCGTTGTTCCGGCGAGTAACGCCGTTCCGGCGGGGAAGAATCAGGGTACCATCGTTATATTCAACTTGGACTCCACCGTTTCCTCTTCTTGTCTCAGAGAAATTTTCGAGGCTTTTGGTCCTGTGAAGGAGTTGAGAGATACGCCATTGAAGAAGCATCAAAGATTCGTTGAGTTTTTCGACATTAGGGATGCCGGGAAAGCTTTGAAAGAGATGAACGGAAAAGAAATCAACGGTAAACCGGTGGTGATTGAGTTCAGCCGGCCGGGCGGCCATGGCAACAGGTTATGTAATGCCAACTCGACCACTCCGGCCGTCTTCGGCTCAAATAGTTTATATTCCCGGAGTCTGAAATGTCCACCTCCTCGACCTCCGCCGCCTCCGCCACCACCGCCTCTTCCCATGCCACCCCGAAAATTTTCGGGTGCCGGTGCTTCAAGCTTTACACAACAACGGTGGAACTATTCGAAACCCTATAGTTTGTCTAGGAAATTGAATCCCAGTAAGAGGAGTCAAAGCCCAAGTAACCCCAGGAAGAGCTTGGAGTCTAATAGTTTGAATGTAAAAATGGCTGCCCTCGATTTAGATGGCGCAGCTGCATGTGGTGAAATTGATGAGATAGAGTCATGTGGTTCGTTGCGAAGGAACCCGAAGATCATCCACAGTATTCCCGCTGTTGCTGCTGAGCAACAGCCGCAGCAACAACTACAACCCAGTAGGAGTAAGCTAAGGAAGTGTAGACAGTCCAAGAAATTCGATTCTCGATTCCTGATTACTGATAACACTACGGTGGATTCCGATTGCCGAGATTCGAGAACCACCGTGATGATCAAGAACATCCCCAACAAGTACAGTCAGAAGCTGTTGTTGAACATGCTGGACAACCACTGCATTCACTGCAACGAGCAGATAGGCAACGGCCATAACCAGCCGATTTCCTCCTACGATTTTGTATATCTCCCCATTGATTTCAACAACAAATGCAACGTTGGATATGGATTTGTCAACATGACCTCGCCGGAGGCGACATGGCGGCTGTACAAGGCGTTTCATCTTCAACCTTGGGAGGTTTTCAACTCCAGAAAAATCTGTGAAGTCACCTATGCTAGAGTACAGGGACTGGAAGCACTGAAGGATCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGACCACTACCTGCCAGTGGTGTTTACGCTGCCTCGGGACGGTAGGCAACTGACCGAGCCACTCCCCATTGGCGGCCACAAGCAGCAGCCCATTTCCATTGCTCTTGAGATCAACGATGAAGATCATGTCGACCAACCGGAGGAAGAAGCCATGAACGGAAGCAGCAGCAGTACTGGAACTGGGGGTGGTGGTGGTGGCTTTGATGAAGAATAA 1926 52.75 MAETGVYGRFPGSLDPRAQEFRPRYSTAVFLPPPPPQPQPVFFPFPPIGEVSFLPFCDGGVSYAPFPAAVRSVGEAVSSVATRSLAVSSVPCDASETMVRRELEGFGDVRGVQMERVKEGVVIVHFYDIRHSERALRQIRDQHMNYQCRLRDRLSFSNSAAQFPLLSPAPGLIAGHAVWAQFVVPASNAVPAGKNQGTIVIFNLDSTVSSSCLREIFEAFGPVKELRDTPLKKHQRFVEFFDIRDAGKALKEMNGKEINGKPVVIEFSRPGGHGNRLCNANSTTPAVFGSNSLYSRSLKCPPPRPPPPPPPPPLPMPPRKFSGAGASSFTQQRWNYSKPYSLSRKLNPSKRSQSPSNPRKSLESNSLNVKMAALDLDGAAACGEIDEIESCGSLRRNPKIIHSIPAVAAEQQPQQQLQPSRSKLRKCRQSKKFDSRFLITDNTTVDSDCRDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGNGHNQPISSYDFVYLPIDFNNKCNVGYGFVNMTSPEATWRLYKAFHLQPWEVFNSRKICEVTYARVQGLEALKDHFKNSKFPCEMDHYLPVVFTLPRDGRQLTEPLPIGGHKQQPISIALEINDEDHVDQPEEEAMNGSSSSTGTGGGGGGFDEE 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4102171 4105094 + Sed0012446.1 Sed04g0552 709155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed04g0552 641 Pfam RNA recognition motif 2 453 563 IPR007201 -
Sed04g0552 641 MobiDBLite consensus disorder prediction 299 319 - -
Sed04g0552 641 SUPERFAMILY RNA-binding domain, RBD 83 272 IPR035979 GO:0003676(InterPro)
Sed04g0552 641 Gene3D - 192 276 IPR012677 -
Sed04g0552 641 FunFam Terminal EAR1-like 1 402 559 - -
Sed04g0552 641 SMART rrm1_1 84 151 IPR000504 GO:0003723(InterPro)
Sed04g0552 641 SMART rrm1_1 198 266 IPR000504 GO:0003723(InterPro)
Sed04g0552 641 MobiDBLite consensus disorder prediction 592 641 - -
Sed04g0552 641 Pfam RNA recognition motif 199 263 IPR000504 GO:0003723(InterPro)
Sed04g0552 641 Gene3D - 78 157 IPR012677 -
Sed04g0552 641 CDD RRM3_EAR1_like 453 554 IPR034458 -
Sed04g0552 641 Gene3D - 403 557 IPR012677 -
Sed04g0552 641 PANTHER RNA RECOGNITION MOTIF-CONTAINING 81 600 - -
Sed04g0552 641 MobiDBLite consensus disorder prediction 324 366 - -
Sed04g0552 641 MobiDBLite consensus disorder prediction 295 366 - -
Sed04g0552 641 SUPERFAMILY RNA-binding domain, RBD 449 552 IPR035979 GO:0003676(InterPro)
Sed04g0552 641 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 270 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed04g0552 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0834 Sed-Chr3:4997482 Sed04g0552 Sed-Chr4:4102171 2.50E-29 dispersed
Sed04g0009 Sed-Chr4:67051 Sed04g0552 Sed-Chr4:4102171 5.50E-106 dispersed
Sed04g0552 Sed-Chr4:4102171 Sed10g0166 Sed-Chr10:1038822 4.70E-39 dispersed
Sed04g0552 Sed-Chr4:4102171 Sed04g3466 Sed-Chr4:44346988 1.80E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g598 . . . . . . Bma14g01833 . . . . . . . Sed04g0552 . Cpe01g01579 Bhi07g01835 Tan04g0132 Cmetu10g1346 Lac13g0115 Hepe10g0058 . . Cla05g02618 Cam05g2805 Cec05g2841 Cco05g2873 Clacu05g2809 Cmu05g2657 Cre05g2773 . . . . Lsi04g00631 Csa05g02256 Chy10g00826 Cme10g00605 Blo06g00838 . Bda07g01649 . . . . . . . . Cma04g01791 Cma05g00053 Car04g01806 Car05g00041 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002936 2 2 1 1 1 1 3 1 1 2 2 1 3 2 2 3 1 0 3 1 2 2 2 2 2 2 3 2 2 2 54